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SCNpilot_cont_1000_bf_scaffold_2011

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_2011_1
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..1583)
DNA (1581bp) protein (527aa)
von Willebrand factor A n=1 Tax=Saccharopolyspora spinosa RepID=UPI000237B401 rbh
VWA domain containing CoxE-like protein {ECO:0000313|EMBL:AIG80499.1}; TaxID=208439 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis japonica.;"
von Willebrand factor A rbh
SCNpilot_cont_1000_bf_scaffold_2011_2
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1620..2852)
DNA (1233bp) protein (411aa)
ATPase AAA n=1 Tax=Saccharopolyspora spinosa RepID=UPI000237B400 rbh
MoxR-like ATPase {ECO:0000313|EMBL:EHR48366.1}; Flags: Precursor;; TaxID=882083 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
ATPase rbh
SCNpilot_cont_1000_bf_scaffold_2011_3
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3852..6986)
DNA (3135bp) protein (1045aa)
DNA-binding transcriptional activator of the SARP family n=1 Tax=Saccharomonospora marina XMU15 RepID=H5WX95_9PSEU rbh
Response regulator receiver {ECO:0000313|EMBL:EWM12036.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
response regulator receiver/SARP domain-containing protein rbh
SCNpilot_cont_1000_bf_scaffold_2011_4
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7065..7454)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI000382247E
Membrane protein {ECO:0000313|EMBL:EWM12038.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_2011_5
unknown

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comp(7465..7575)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_2011_6
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7619..8125)
DNA (507bp) protein (169aa)
TadE-like protein n=1 Tax=Saccharomonospora marina XMU15 RepID=H5WX98_9PSEU
TadE-like protein {ECO:0000313|EMBL:EHR48372.1}; TaxID=882083 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
TadE family protein
SCNpilot_cont_1000_bf_scaffold_2011_7
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8122..8652)
DNA (531bp) protein (177aa)
pilus assembly protein TadE n=1 Tax=Amycolatopsis balhimycina RepID=UPI0003628CA9
Putative membrane protein {ECO:0000313|EMBL:EWC64536.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
TadE family protein
SCNpilot_cont_1000_bf_scaffold_2011_8
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8649..8924)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI0003613DDA
Uncharacterized protein {ECO:0000313|EMBL:EWC64535.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
SCNpilot_cont_1000_bf_scaffold_2011_9
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9140..10216
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Amycolatopsis balhimycina RepID=UPI000367481D rbh
Phage integrase family protein {ECO:0000313|EMBL:AIJ23978.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
phage integrase family protein rbh
SCNpilot_cont_1000_bf_scaffold_2011_10
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10221..10553
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Amycolatopsis balhimycina RepID=UPI000368E98B
Uncharacterized protein {ECO:0000313|EMBL:EON23694.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_2011_11
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10550..12310
DNA (1761bp) protein (587aa)
hypothetical protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI00037D2839 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABL79313.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
SCNpilot_cont_1000_bf_scaffold_2011_12
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12330..12758)
DNA (429bp) protein (143aa)
secretion system protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI000375172E
Type II/IV secretion system protein TadC, associated with Flp pilus assembly {ECO:0000313|EMBL:EWC64534.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
type II secretion system protein
Displaying 12 items

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