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SCNpilot_cont_1000_bf_scaffold_523

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_523_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91..1053)
DNA (963bp) protein (321aa)
VacJ-like lipoprotein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z7H9_9SPHN rbh
VacJ lipoprotein {ECO:0000313|EMBL:GAO55500.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
vacJ; surface lipoprotein; K04754 lipoprotein
SCNpilot_cont_1000_bf_scaffold_523_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1050..1643)
DNA (594bp) protein (198aa)
Hopanoid biosynthesis associated membrane protein HpnM n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0003050332
Uncharacterized protein {ECO:0000313|EMBL:GAO55499.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Hopanoid biosynthesis associated membrane protein HpnM
SCNpilot_cont_1000_bf_scaffold_523_3
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1799..2764
DNA (966bp) protein (322aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2) rbh
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7H6_9SPHN rbh
SCNpilot_cont_1000_bf_scaffold_523_4
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2773..3918
DNA (1146bp) protein (382aa)
radical SAM protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA105 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO40249.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
Fe-S oxidoreductase rbh
SCNpilot_cont_1000_bf_scaffold_523_5
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3928..4554)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0003776DB5
Uncharacterized protein {ECO:0000313|EMBL:GAO40250.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hopanoid-associated phosphorylase
SCNpilot_cont_1000_bf_scaffold_523_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4551..6488)
DNA (1938bp) protein (646aa)
Squalene--hopene cyclase {ECO:0000313|EMBL:GAO55496.1}; EC=5.4.99.17 {ECO:0000313|EMBL:GAO55496.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Squalene hopene cyclase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7H4_9SPHN rbh
squalene-hopene cyclase rbh
SCNpilot_cont_1000_bf_scaffold_523_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6498..7754)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000318B9D6 rbh
Phytoene desaturase {ECO:0000313|EMBL:GAO55495.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
squalene-associated FAD-dependent desaturase
SCNpilot_cont_1000_bf_scaffold_523_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7751..8575)
DNA (825bp) protein (275aa)
Phytoene synthase {ECO:0000313|EMBL:GAO55494.1}; EC=2.5.1.32 {ECO:0000313|EMBL:GAO55494.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phytoene synthase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA0FF rbh
squalene synthase HpnD rbh
SCNpilot_cont_1000_bf_scaffold_523_9
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8572..9396)
DNA (825bp) protein (275aa)
Squalene synthase HpnC n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7H1_9SPHN rbh
Squalene synthase HpnC {ECO:0000313|EMBL:EGD59483.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
squalene synthase HpnC
SCNpilot_cont_1000_bf_scaffold_523_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9393..9812)
DNA (420bp) protein (140aa)
Phytoene synthase {ECO:0000313|EMBL:GAO55492.1}; EC=2.5.1.32 {ECO:0000313|EMBL:GAO55492.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycosyl transferase family 2 n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA0FD
hopene-associated glycosyltransferase HpnB
SCNpilot_cont_1000_bf_scaffold_523_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9836..10327)
DNA (492bp) protein (164aa)
Phytoene synthase {ECO:0000313|EMBL:GAO55492.1}; EC=2.5.1.32 {ECO:0000313|EMBL:GAO55492.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Hopene-associated glycosyltransferase HpnB n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7H0_9SPHN
hopene-associated glycosyltransferase HpnB
SCNpilot_cont_1000_bf_scaffold_523_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10324..11328)
DNA (1005bp) protein (335aa)
Dihydroflavonol-4-reductase {ECO:0000313|EMBL:GAO55491.1}; EC=1.1.1.219 {ECO:0000313|EMBL:GAO55491.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
NAD-dependent dehydratase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA0FB rbh
hopanoid-associated sugar epimerase rbh
SCNpilot_cont_1000_bf_scaffold_523_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11375..12541
DNA (1167bp) protein (389aa)
Ceramide glucosyltransferase {ECO:0000313|EMBL:GAO55490.1}; EC=2.4.1.80 {ECO:0000313|EMBL:GAO55490.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hopanoid biosynthesis associated glycosyl transferase HpnI n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA0FA rbh
hopanoid biosynthesis associated glycosyl transferase protein HpnI rbh
SCNpilot_cont_1000_bf_scaffold_523_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12538..13983
DNA (1446bp) protein (482aa)
radical SAM protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002881EB0 rbh
Fe-S oxidoreductase {ECO:0000313|EMBL:GAO55489.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hopanoid biosynthesis associated radical SAM protein HpnJ
SCNpilot_cont_1000_bf_scaffold_523_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13989..14819
DNA (831bp) protein (277aa)
Hopanoid biosynthesis associated protein HpnK n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7G6_9SPHN rbh
Cellobiose phosphotransferase system celC {ECO:0000313|EMBL:GAO55488.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hopanoid biosynthesis associated protein HpnK rbh
SCNpilot_cont_1000_bf_scaffold_523_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14830..15738
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA0F6
Uncharacterized protein {ECO:0000313|EMBL:GAO55487.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_523_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15855..16724
DNA (870bp) protein (290aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7G4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO55486.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_523_18
unknown

Not on your lists

comp(16620..16847)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_523_19
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16834..19158)
DNA (2325bp) protein (775aa)
nitric oxide reductase; K04561 nitric oxide reductase subunit B [EC:1.7.2.5]
Nitric oxide reductase n=1 Tax=Burkholderia pseudomallei (strain 668) RepID=A3NL34_BURP6
Nitric oxide reductase subunit B {ECO:0000313|EMBL:GAJ30419.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
SCNpilot_cont_1000_bf_scaffold_523_20
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19195..19671)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Acetobacter pasteurianus RepID=UPI0002FC405A
Uncharacterized protein {ECO:0000313|EMBL:EAQ36338.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_523_21
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19758..20036
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D8A282
Uncharacterized protein {ECO:0000313|EMBL:KJS08198.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_523_22
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20163..20432
DNA (270bp) protein (90aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHE8_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:KGB58680.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
TonB-dependent receptor
SCNpilot_cont_1000_bf_scaffold_523_23
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20639..20848
DNA (210bp) protein (70aa)
Uncharacterized protein {ECO:0000313|EMBL:KFG89459.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
SCNpilot_cont_1000_bf_scaffold_523_24
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20900..21175
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MW85_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW19558.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_523_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21206..22333)
DNA (1128bp) protein (376aa)
Glycosidase related protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RYJ9_9SPHN rbh
Glycosidase {ECO:0000313|EMBL:AJP74139.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glycosidase related protein rbh
SCNpilot_cont_1000_bf_scaffold_523_26
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22330..22578)
DNA (249bp) protein (83aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SKM0_9SPHN
Short-chain dehydrogenase {ECO:0000313|EMBL:KKC24792.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_1000_bf_scaffold_523_27
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22618..23109)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Bordetella parapertussis (strain Bpp5) RepID=K0MA81_BORPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ51002.1}; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain Bpp5).;"
SCNpilot_cont_1000_bf_scaffold_523_28
Dialister micraerophilus, Dialister, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(23663..24931)
DNA (1269bp) protein (423aa)
Transporter, major facilitator family protein n=1 Tax=Dialister microaerophilus UPII 345-E RepID=E4L9D2_9FIRM rbh
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFR42458.1}; TaxID=910314 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Dialister.;" source="Dialister microaerophilus UPII 345-E.;"
Major facilitator protein rbh
SCNpilot_cont_1000_bf_scaffold_523_29
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24962..26284)
DNA (1323bp) protein (441aa)
guanine deaminase; K01487 guanine deaminase [EC:3.5.4.3] rbh
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003668AAB rbh
Guanine deaminase {ECO:0000313|EMBL:EHL96687.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_cont_1000_bf_scaffold_523_30
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26411..28393)
DNA (1983bp) protein (661aa)
Myosin-cross-reactive antigen n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S707_9SPHN rbh
myosin-cross-reactive antigen rbh
Myosin-cross-reactive antigen {ECO:0000313|EMBL:AGH50723.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Displaying items 1-30 of 83 in total

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