ggKbase home page

SCNpilot_cont_1000_bf_scaffold_350

Search features with annotation key words

Displaying items 1-30 of 293 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_350_1
R_WOR_2_48_11, WOR-2, Bacteria

Not on your lists

comp(2..511)
DNA (510bp) protein (170aa)
Putative uncharacterized protein id=3283403 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Moritella sp. PE36 genus=Moritella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_48_11_curated
SCNpilot_cont_1000_bf_scaffold_350_2
unknown

Not on your lists

544..1245
DNA (702bp) protein (234aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_350_trna_1
unknown

Not on your lists

1398..1471
DNA (74bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_350_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1635..3821
DNA (2187bp) protein (729aa)
peptidyl-dipeptidase Dcp (EC:3.4.15.5) rbh
Putative peptidyl dipeptidase/oligopeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ16_9GAMM rbh
Putative peptidyl dipeptidase/oligopeptidase {ECO:0000313|EMBL:EIL92457.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_1000_bf_scaffold_350_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3887..4396)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031870EA
Uncharacterized protein {ECO:0000313|EMBL:AHX13640.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_350_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4510..7359)
DNA (2850bp) protein (950aa)
Autotransporter serine protease n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVJ8_9GAMM
Autotransporter serine protease {ECO:0000313|EMBL:EIM03490.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
autotransporter-associated beta strand repeat protein
SCNpilot_cont_1000_bf_scaffold_350_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7510..8685
DNA (1176bp) protein (392aa)
acetyl-CoA acetyltransferase n=1 Tax=Dyella japonica RepID=UPI00030FCAC9
Acetoacetyl-CoA thiolase {ECO:0000313|EMBL:EIL96633.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
acetyl-CoA acetyltransferase
SCNpilot_cont_1000_bf_scaffold_350_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8840..9235
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WPP2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89650.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_1000_bf_scaffold_350_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9261..10688
DNA (1428bp) protein (476aa)
Methylcrotonoyl-CoA carboxylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8P8_9GAMM
Methylcrotonoyl-CoA carboxylase {ECO:0000313|EMBL:EIL95839.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)
SCNpilot_cont_1000_bf_scaffold_350_9
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10701..11261)
DNA (561bp) protein (187aa)
hypothetical protein
Blr6985 protein id=4954740 bin=GWC2_OP3-like_45_7 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_cont_1000_bf_scaffold_350_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11281..12141)
DNA (861bp) protein (287aa)
Iron permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9Q9_9GAMM rbh
Iron permease {ECO:0000313|EMBL:EIL96200.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
high-affinity Fe2+/Pb2+ permease
SCNpilot_cont_1000_bf_scaffold_350_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12149..12487)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034D8B0E
Uncharacterized protein {ECO:0000313|EMBL:EIL96199.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_350_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12701..13495
DNA (795bp) protein (265aa)
Enoyl-CoA hydratase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5X4_9GAMM
Enoyl-CoA hydratase {ECO:0000313|EMBL:EIL94865.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
enoyl-CoA hydratase/carnithine racemase
SCNpilot_cont_1000_bf_scaffold_350_13
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13498..13887
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000368776C
Glyoxalase {ECO:0000313|EMBL:AKC87919.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_350_14
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14107..14628
DNA (522bp) protein (174aa)
Cupin n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2HBE7_9BURK
Cupin {ECO:0000313|EMBL:ESH86934.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
cupin
SCNpilot_cont_1000_bf_scaffold_350_15
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14631..15149
DNA (519bp) protein (173aa)
Cupin n=1 Tax=Rhodanobacter sp. 115 RepID=I4WA77_9GAMM
Cupin {ECO:0000313|EMBL:KGI78403.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
cupin
SCNpilot_cont_1000_bf_scaffold_350_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15149..17155
DNA (2007bp) protein (669aa)
acetyl/propionyl-CoA carboxylase, alpha subunit (EC:6.3.4.14 6.4.1.4)
Carbamoyl-phosphate synthase L chain ATP-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5X3_9GAMM
Carbamoyl-phosphate synthase L chain ATP-binding protein {ECO:0000313|EMBL:EIL94864.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_1000_bf_scaffold_350_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17377..18687
DNA (1311bp) protein (437aa)
Antimicrobial peptide ABC transporter permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4VTM7_9GAMM
Antimicrobial peptide ABC transporter permease {ECO:0000313|EMBL:EIL90568.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ABC-type antimicrobial peptide transport system, permease component
SCNpilot_cont_1000_bf_scaffold_350_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18696..19928
DNA (1233bp) protein (411aa)
Antimicrobial peptide ABC transporter permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4VTM6_9GAMM
Antimicrobial peptide ABC transporter permease {ECO:0000313|EMBL:EIL90567.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ABC-type antimicrobial peptide transport system, permease component
SCNpilot_cont_1000_bf_scaffold_350_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19944..21251
DNA (1308bp) protein (436aa)
ABC transporter permease n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJL9_9GAMM
ABC-type antimicrobial peptide transport system, permease component
ABC-type antimicrobial peptide transport system, permease component {ECO:0000313|EMBL:AGG87976.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_1000_bf_scaffold_350_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21265..22497
DNA (1233bp) protein (411aa)
ABC-type antimicrobial peptide transport system, permease component n=1 Tax=Rhodanobacter denitrificans RepID=M4NDN4_9GAMM rbh
ABC-type antimicrobial peptide transport system, permease component rbh
ABC-type antimicrobial peptide transport system, permease component {ECO:0000313|EMBL:AGG87977.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_1000_bf_scaffold_350_21
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22497..23801
DNA (1305bp) protein (435aa)
ABC transporter ATP-binding protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B5120 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHX12149.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ABC-type antimicrobial peptide transport system, permease component
SCNpilot_cont_1000_bf_scaffold_350_22
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23803..25032
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VIZ8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL87189.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ABC-type antimicrobial peptide transport system, permease component
SCNpilot_cont_1000_bf_scaffold_350_23
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25105..26001
DNA (897bp) protein (299aa)
Hydroxymethylglutaryl-CoA lyase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WA74_9GAMM
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:EIL96365.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
isopropylmalate/homocitrate/citramalate synthase
SCNpilot_cont_1000_bf_scaffold_350_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26168..26656
DNA (489bp) protein (163aa)
Acetyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VLL0_9GAMM
Acetyltransferase {ECO:0000313|EMBL:EIL88101.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
acetyltransferase, N-acetylglutamate synthase
SCNpilot_cont_1000_bf_scaffold_350_25
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26715..27482
DNA (768bp) protein (256aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter sp. 115 RepID=I4VLL2_9GAMM
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EIL88103.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
SCNpilot_cont_1000_bf_scaffold_350_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27603..28166
DNA (564bp) protein (188aa)
Elongation factor P n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMK9_9GAMM
Elongation factor P {ECO:0000313|EMBL:EIM00701.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
translation elongation factor P/translation initiation factor 5A
SCNpilot_cont_1000_bf_scaffold_350_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28520..30052
DNA (1533bp) protein (511aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000360779C rbh
Amino acid permease {ECO:0000313|EMBL:EIM02066.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
amino acid transporter
SCNpilot_cont_1000_bf_scaffold_350_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30084..31526
DNA (1443bp) protein (481aa)
Amino acid transporter n=1 Tax=Rhodanobacter denitrificans RepID=M4NCV4_9GAMM
amino acid transporter
Amino acid transporter {ECO:0000313|EMBL:AGG88530.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_1000_bf_scaffold_350_29
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31753..32172)
DNA (420bp) protein (140aa)
High potential iron-sulfur protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344A9B5
High potential iron-sulfur protein {ECO:0000313|EMBL:KGI77968.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
High potential iron-sulfur protein
Displaying items 1-30 of 293 in total

View Taxonomy