ggKbase home page

SCNpilot_cont_1000_bf_scaffold_553

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_553_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..257)
DNA (255bp) protein (85aa)
Protein kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T8_9GAMM
Protein kinase {ECO:0000313|EMBL:EIL93079.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_1000_bf_scaffold_553_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(291..1010)
DNA (720bp) protein (240aa)
protein phosphatase (EC:3.1.3.16); K01090 protein phosphatase [EC:3.1.3.16] rbh
Phosphoprotein phosphatase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWX5_9GAMM rbh
Phosphoprotein phosphatase {ECO:0000313|EMBL:EIL91716.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_cont_1000_bf_scaffold_553_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1007..2554)
DNA (1548bp) protein (516aa)
Type VI secretion-associated protein, BMA_A0400 family n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWX6_9GAMM
Type VI secretion-associated protein, BMA_A0400 family {ECO:0000313|EMBL:EIL91717.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
type VI secretion-associated protein, BMA_A0400 family
SCNpilot_cont_1000_bf_scaffold_553_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2559..6095)
DNA (3537bp) protein (1179aa)
type VI secretion protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003494D80 rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91718.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
type VI secretion protein IcmF; K11891 type VI secretion system protein ImpL rbh
SCNpilot_cont_1000_bf_scaffold_553_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6100..7404)
DNA (1305bp) protein (435aa)
membrane protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344B5DC
Type IV / VI secretion system protein, DotU family {ECO:0000313|EMBL:EIL91719.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
type IV / VI secretion system protein, DotU family; K11892 type VI secretion system protein ImpK
SCNpilot_cont_1000_bf_scaffold_553_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7409..8746)
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWX9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91720.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein; K11893 type VI secretion system protein ImpJ rbh
SCNpilot_cont_1000_bf_scaffold_553_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8835..10184)
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344E138 rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91721.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_553_8

Not on your lists

comp(10192..10740)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003479408
Uncharacterized protein {ECO:0000313|EMBL:EQD39090.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_553_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10754..12748)
DNA (1995bp) protein (665aa)
Type VI secretion system Vgr family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWY2_9GAMM rbh
Type VI secretion system Vgr family protein {ECO:0000313|EMBL:EIL91723.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_553_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12745..14169)
DNA (1425bp) protein (475aa)
Methyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWY3_9GAMM
Methyltransferase {ECO:0000313|EMBL:EIL91724.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_553_11
Bilophila sp. 4_1_30, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14182..14478)
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Bilophila sp. 4_1_30 RepID=G1V6D3_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW44083.1}; TaxID=693988 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila sp. 4_1_30.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_553_12
unknown

Not on your lists

comp(14493..14927)
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_553_13
unknown

Not on your lists

comp(15005..15370)
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_553_14
unknown

Not on your lists

comp(15410..16012)
DNA (603bp) protein (201aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_553_15
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16073..18853)
DNA (2781bp) protein (927aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031E41F2 rbh
ATPase AAA {ECO:0000313|EMBL:AIF48234.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
type VI secretion ATPase, ClpV1 family; K11907 type VI secretion system protein VasG rbh
SCNpilot_cont_1000_bf_scaffold_553_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18915..19937)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWY7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91728.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein; K11895 type VI secretion system protein ImpH rbh
SCNpilot_cont_1000_bf_scaffold_553_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19901..21787)
DNA (1887bp) protein (629aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWY8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91729.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein; K11896 type VI secretion system protein ImpG rbh
SCNpilot_cont_1000_bf_scaffold_553_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21784..22284)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034542DA
Uncharacterized protein {ECO:0000313|EMBL:EIL91730.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein; K11897 type VI secretion system protein ImpF
SCNpilot_cont_1000_bf_scaffold_553_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22297..23088)
DNA (792bp) protein (264aa)
Virulence protein SciE type n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0S1_9GAMM rbh
hypothetical protein; K11898 type VI secretion system protein ImpE
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_1000_bf_scaffold_553_20
Xanthomonas euvesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23289..23792)
DNA (504bp) protein (168aa)
Hemolysin-coregulated protein n=3 Tax=Xanthomonas RepID=G2LT75_9XANT
hypothetical protein; K11903 type VI secretion system secreted protein Hcp
Uncharacterized protein {ECO:0000313|EMBL:CAJ23799.1}; TaxID=316273 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. vesicatoria (strain 85-10).;"
SCNpilot_cont_1000_bf_scaffold_553_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23893..25389)
DNA (1497bp) protein (499aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWZ2_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91733.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein; K11900 type VI secretion system protein ImpC rbh
SCNpilot_cont_1000_bf_scaffold_553_22

Not on your lists

comp(25395..25922)
DNA (528bp) protein (176aa)
Type VI secretion protein, VC_A0107 family n=1 Tax=mine drainage metagenome RepID=T1CIR0_9ZZZZ
Type VI secretion protein, VC_A0107 family {ECO:0000313|EMBL:EQD66504.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
type VI secretion protein, VC_A0107 family; K11901 type VI secretion system protein ImpB
SCNpilot_cont_1000_bf_scaffold_553_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26454..27485
DNA (1032bp) protein (344aa)
Lytic murein transglycosylase B n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VQR0_9GAMM
Lytic murein transglycosylase B {ECO:0000313|EMBL:EIL89551.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
lytic murein transglycosylase B
SCNpilot_cont_1000_bf_scaffold_553_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27482..28396
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034CD61A
Rare lipoprotein A {ECO:0000313|EMBL:EIL98329.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
rare lipoprotein A
SCNpilot_cont_1000_bf_scaffold_553_25
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28584..29882
DNA (1299bp) protein (433aa)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VQQ8_9GAMM
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:GAN45203.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
penicillin-binding protein 6
SCNpilot_cont_1000_bf_scaffold_553_26
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29892..30179
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E78DE4
Uncharacterized protein {ECO:0000313|EMBL:GAN45204.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_553_27
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30199..30843
DNA (645bp) protein (215aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source=
Lipoyltransferase n=2 Tax=mine drainage metagenome RepID=T0YML2_9ZZZZ
lipoate-protein ligase B
SCNpilot_cont_1000_bf_scaffold_553_28
unknown

Not on your lists

comp(30739..31008)
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_553_29
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31024..33315
DNA (2292bp) protein (764aa)
peptidase S41 n=1 Tax=Dyella japonica RepID=UPI0002DFDEA0
Peptidase S41 {ECO:0000313|EMBL:GAN45207.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
C-terminal processing peptidase
SCNpilot_cont_1000_bf_scaffold_553_trna_2
unknown

Not on your lists

comp(33332..33405)
DNA (74bp)
transferRNA
Displaying items 1-30 of 33 in total

View Taxonomy