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SCNpilot_cont_1000_bf_scaffold_1119

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1119_1
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2..1078)
DNA (1077bp) protein (359aa)
5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002EA746D rbh
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000313|EMBL:KJL32768.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
SCNpilot_cont_1000_bf_scaffold_1119_2
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1421..2362
DNA (942bp) protein (314aa)
ABC transporter related protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1B7_9MICO rbh
Nodulation ABC transporter NodI {ECO:0000313|EMBL:EZP26115.1}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
ABC transporter-like protein; K09695 lipooligosaccharide transport system ATP-binding protein
SCNpilot_cont_1000_bf_scaffold_1119_3
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2359..3261
DNA (903bp) protein (301aa)
ABC transporter n=1 Tax=Microbacterium paraoxydans RepID=UPI00037B3EF2 rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
ABC-2 type transporter; K09694 lipooligosaccharide transport system permease protein
SCNpilot_cont_1000_bf_scaffold_1119_4
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3258..4085
DNA (828bp) protein (276aa)
ABC transporter n=1 Tax=Microbacterium sp. 11MF RepID=UPI00037C61AF rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
ABC-2 type transporter; K09694 lipooligosaccharide transport system permease protein
SCNpilot_cont_1000_bf_scaffold_1119_5
Isoptericola variabilis, Isoptericola, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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4142..4843
DNA (702bp) protein (234aa)
Putative uncharacterized protein n=1 Tax=Isoptericola variabilis (strain 225) RepID=F6FRQ8_ISOV2
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEG42999.1}; TaxID=743718 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Isoptericola.;" source="Isoptericola variabilis (strain 225).;"
SCNpilot_cont_1000_bf_scaffold_1119_6
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4895..5338
DNA (444bp) protein (148aa)
conjugal transfer protein TrbL n=1 Tax=Agromyces subbeticus RepID=UPI0003B3C7CE
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KHK99518.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1119_7
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(5353..5826)
DNA (474bp) protein (158aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
ribH; riboflavin synthase beta-chain; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KD79_9MICO
SCNpilot_cont_1000_bf_scaffold_1119_8
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(5823..7121)
DNA (1299bp) protein (433aa)
ribA; 3,4-dihydroxy-2-butanone 4-phosphate synthase; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] rbh
riboflavin biosynthesis protein RibA n=1 Tax=Microbacterium yannicii RepID=UPI0002F40BF9 rbh
Riboflavin biosynthesis protein RibBA {ECO:0000256|SAAS:SAAS00280052}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
SCNpilot_cont_1000_bf_scaffold_1119_9
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7118..8659)
DNA (1542bp) protein (514aa)
riboflavin synthase alpha chain; K00793 riboflavin synthase [EC:2.5.1.9]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002EAD4C8
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:EIC08945.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
SCNpilot_cont_1000_bf_scaffold_1119_10
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8946..9905)
DNA (960bp) protein (320aa)
transcriptional regulator n=1 Tax=Agromyces subbeticus RepID=UPI0003B5925B rbh
Putative DeoR-family transcriptional regulator {ECO:0000313|EMBL:EZP26105.1}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
transcriptional regulator, DeoR family rbh
SCNpilot_cont_1000_bf_scaffold_1119_11
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9993..11765
DNA (1773bp) protein (591aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000377049D rbh
Glycerol-3-phosphate dehydrogenase {ECO:0000313|EMBL:EZP26104.1}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
glycerol-3-phosphate dehydrogenase
SCNpilot_cont_1000_bf_scaffold_1119_12
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11796..13340
DNA (1545bp) protein (515aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
glpK; glycerol kinase; K00864 glycerol kinase [EC:2.7.1.30]
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00031BA818 rbh
SCNpilot_cont_1000_bf_scaffold_1119_13
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13333..14205)
DNA (873bp) protein (291aa)
mutM2; formamidopyrimidine-DNA glycosylase; K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] rbh
DNA lyase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036CF68C rbh
DNA lyase {ECO:0000313|EMBL:KHK99511.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
SCNpilot_cont_1000_bf_scaffold_1119_14
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14252..14818)
DNA (567bp) protein (189aa)
Putative cetyltransferase n=1 Tax=Microbacterium sp. TS-1 RepID=U2XS50_9MICO
Putative cetyltransferase {ECO:0000313|EMBL:GAD35677.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
acetyltransferase
SCNpilot_cont_1000_bf_scaffold_1119_15
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15587..16015
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Microbacterium sp. 11MF RepID=UPI00037640ED
Uncharacterized protein {ECO:0000313|EMBL:EXJ51606.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1119_16
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16375..17379)
DNA (1005bp) protein (335aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
trpS; tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] rbh
Tryptophan--tRNA ligase n=1 Tax=Microbacterium sp. TS-1 RepID=U2YRL7_9MICO rbh
SCNpilot_cont_1000_bf_scaffold_1119_17
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17570..18427
DNA (858bp) protein (286aa)
Putative phosphoenolpyruvate synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062}; Short=PEP synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062};; Short=PSRP {ECO:0000256|HAMAP-Rule:MF_01062};; EC=2.7.11.33 {ECO:0000256|HAMAP-Rule:MF_01062};; EC=2.7.4.28 {ECO:0000256|HAMAP-Rule:MF_01062};; Pyruvate, water dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium
Putative phosphoenolpyruvate synthase regulatory protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B7R9_9MICO rbh
hypothetical protein; K09773 hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_1119_18
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18450..20819
DNA (2370bp) protein (790aa)
Phosphoenolpyruvate synthase {ECO:0000256|PIRNR:PIRNR000854}; Short=PEP synthase {ECO:0000256|PIRNR:PIRNR000854};; EC=2.7.9.2 {ECO:0000256|PIRNR:PIRNR000854};; Pyruvate, water dikinase {ECO:0000256|PIRNR:PIRNR000854}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
phosphoenolpyruvate synthase (EC:2.7.9.2); K01007 pyruvate, water dikinase [EC:2.7.9.2] rbh
Phosphoenolpyruvate synthase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A692_9MICO rbh
SCNpilot_cont_1000_bf_scaffold_1119_19
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20862..21191)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000368176B
Uncharacterized protein {ECO:0000313|EMBL:KJL31669.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1119_20
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21261..21956)
DNA (696bp) protein (232aa)
exonuclease III; K01142 exodeoxyribonuclease III [EC:3.1.11.2]
exodeoxyribonuclease III n=1 Tax=Microbacterium sp. 292MF RepID=UPI00035D9185
Exodeoxyribonuclease III Xth {ECO:0000313|EMBL:CDJ98882.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
SCNpilot_cont_1000_bf_scaffold_1119_21
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21971..23218)
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000362130C rbh
Ribonuclease BN {ECO:0000313|EMBL:CDJ98881.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein; K07058 membrane protein rbh
SCNpilot_cont_1000_bf_scaffold_1119_22
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23215..24423)
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00038207B0 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK99507.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
putative major facilitator superfamily transporter
SCNpilot_cont_1000_bf_scaffold_1119_23
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24434..25216)
DNA (783bp) protein (261aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
sdhB; succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
succinate dehydrogenase n=1 Tax=Microbacterium yannicii RepID=UPI00030CCEF9
SCNpilot_cont_1000_bf_scaffold_1119_24
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25216..27042)
DNA (1827bp) protein (609aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit; K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
succinate dehydrogenase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000379F24A rbh
SCNpilot_cont_1000_bf_scaffold_1119_25
unknown

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comp(27101..27202)
DNA (102bp) protein (34aa)

This feature has no annotations

Displaying 25 items

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