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SCNpilot_cont_1000_bf_scaffold_1609

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1609_1
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..545)
DNA (543bp) protein (181aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laeva
psrA; phosphoribosylpyrophosphate synthetase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
ribose-phosphate pyrophosphokinase n=1 Tax=Humibacter albus RepID=UPI0003B5710E
SCNpilot_cont_1000_bf_scaffold_1609_2
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(520..1989)
DNA (1470bp) protein (490aa)
glmU; N-acetylglucosamine-1-phosphate uridyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] rbh
N-acetylglucosamine-1-phosphate uridyltransferase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000363252F rbh
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
SCNpilot_cont_1000_bf_scaffold_1609_3
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2029..2442
DNA (414bp) protein (138aa)
MarR-family regulator n=1 Tax=Microbacterium sp. TS-1 RepID=U2YPJ0_9MICO
MarR family transcriptional regulator {ECO:0000313|EMBL:KHK98509.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
marR; transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_1609_4
unknown

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3275..4198
DNA (924bp) protein (308aa)
ABC transporter ATPase n=1 Tax=Bifidobacterium animalis subsp. lactis BS 01 RepID=H0KJ36_BIFAN
SCNpilot_cont_1000_bf_scaffold_1609_5
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4278..5195)
DNA (918bp) protein (306aa)
Glycine/betaine ABC transporter {ECO:0000313|EMBL:KHK98512.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
periplasmic glycine betaine/choline-binding (LipO)protein of an ABC transporter; K05845 osmoprotectant transport system substrate-binding protein id=7721906 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
periplasmic glycine betaine/choline-binding (LipO)protein of an ABC transporter; K05845 osmoprotectant transport system substrate-binding protein
SCNpilot_cont_1000_bf_scaffold_1609_6
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(5257..6006)
DNA (750bp) protein (250aa)
glycine/betaine ABC transporter permease n=1 Tax=Microbacterium sp. B19 RepID=UPI00034BD61A
Glycine/betaine ABC transporter permease {ECO:0000313|EMBL:KEP75171.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
glycine/betaine ABC transporter permease; K05846 osmoprotectant transport system permease protein
SCNpilot_cont_1000_bf_scaffold_1609_7
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6003..6692)
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349D75F rbh
ABC transporter permease {ECO:0000313|EMBL:KHK98514.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
glycine/betaine ABC transporter permease; K05846 osmoprotectant transport system permease protein rbh
SCNpilot_cont_1000_bf_scaffold_1609_8
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6689..7543)
DNA (855bp) protein (285aa)
ABC-type proline/glycine betaine transport systems, ATPase components n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NAP4_MICTS rbh
glycine/betaine ABC transporter ATPase; K05847 osmoprotectant transport system ATP-binding protein rbh
ABC-type proline/glycine betaine transport systems, ATPase components {ECO:0000313|EMBL:BAJ75911.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_1000_bf_scaffold_1609_9
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7566..7868)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B6207D
Uncharacterized protein {ECO:0000313|EMBL:KJL35050.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1609_10
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8036..9358)
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002E60E45 rbh
Enhanced intracellular survival protein {ECO:0000313|EMBL:KJL35051.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
acetyltransferase
SCNpilot_cont_1000_bf_scaffold_1609_11
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9404..10360)
DNA (957bp) protein (319aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
ispE; 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002E453F2 rbh
SCNpilot_cont_1000_bf_scaffold_1609_12
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10336..11403)
DNA (1068bp) protein (356aa)
L-glyceraldehyde 3-phosphate reductase n=1 Tax=Microbacterium barkeri RepID=UPI0002EA89DF rbh
Aldo-keto reductase {ECO:0000313|EMBL:CDK01059.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
oxidoreductase rbh
SCNpilot_cont_1000_bf_scaffold_1609_13
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(11413..12276)
DNA (864bp) protein (288aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=582680 species="Bacteria; Actinobacteria
ksgA; dimethyladenosine transferase; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] rbh
16S rRNA methyltransferase n=1 Tax=Microbacterium yannicii RepID=UPI0002E3B1BC rbh
SCNpilot_cont_1000_bf_scaffold_1609_14
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12348..13826
DNA (1479bp) protein (493aa)
major facilitator transporter n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037660A2 rbh
Major facilitator transporter {ECO:0000313|EMBL:KHK98518.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
permease of the major facilitator superfamily
SCNpilot_cont_1000_bf_scaffold_1609_15
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13864..14127
DNA (264bp) protein (88aa)
antibiotic transporter n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036B4AB6
Antibiotic transporter {ECO:0000313|EMBL:EXJ52982.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
major facilitator superfamily protein
Displaying 15 items

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