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SCNpilot_cont_1000_bf_scaffold_5467

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_5467_1
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(42..1319)
DNA (1278bp) protein (426aa)
beta-lactamase class C and other penicillin binding proteins; K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] rbh
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002E34534 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK95919.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
SCNpilot_cont_1000_bf_scaffold_5467_2
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1332..1583
DNA (252bp) protein (84aa)
Uncharacterized protein {ECO:0000313|EMBL:KJL37161.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
SCNpilot_cont_1000_bf_scaffold_5467_3
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1588..2241
DNA (654bp) protein (218aa)
Heme oxygenase 1 {ECO:0000313|EMBL:KJL37162.1}; EC=1.14.99.3 {ECO:0000313|EMBL:KJL37162.1};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
hmuO; heme oxygenase; K00510 heme oxygenase [EC:1.14.99.3] rbh
heme oxygenase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000377E982 rbh
SCNpilot_cont_1000_bf_scaffold_5467_4
unknown

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comp(2186..3283)
DNA (1098bp) protein (366aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_5467_5
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3539..4633
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AQP1_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD84482.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_5467_6
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4638..6614)
DNA (1977bp) protein (659aa)
copper transporter n=1 Tax=Microbacterium sp. 292MF RepID=UPI000374E3EA rbh
Copper transporter {ECO:0000313|EMBL:KHK95825.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
hypothetical protein; K02351 putative membrane protein; K07245 putative copper resistance protein D rbh
SCNpilot_cont_1000_bf_scaffold_5467_7
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6721..6924)
DNA (204bp) protein (68aa)
DNA-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XAU9_9MICO
DNA-binding protein HU {ECO:0000313|EMBL:KJL37167.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
hup; bacterial nucleoid DNA-binding protein; K03530 DNA-binding protein HU-beta
SCNpilot_cont_1000_bf_scaffold_5467_8
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7079..7681)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036A2C40
HTH-type transcriptional regulator AcrR {ECO:0000313|EMBL:KJL22782.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
Transcriptional regulator, TetR family
SCNpilot_cont_1000_bf_scaffold_5467_9
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7807..8622
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036972E2 rbh
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:KJL37169.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_5467_10
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8689..8994)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Microbacterium yannicii RepID=UPI0002D3749A
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
rpsN; ribosomal protein S14; K02954 small subunit ribosomal protein S14
SCNpilot_cont_1000_bf_scaffold_5467_11
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(8998..9168)
DNA (171bp) protein (57aa)
50S ribosomal protein L33 n=3 Tax=Microbacterium RepID=H8E6X1_9MICO
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
rpmG; ribosomal protein L33; K02913 large subunit ribosomal protein L33
SCNpilot_cont_1000_bf_scaffold_5467_12
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9168..9371)
DNA (204bp) protein (68aa)
50S ribosomal protein L28 n=1 Tax=Microbacterium yannicii RepID=UPI0002D93069
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
rpmB; ribosomal protein L28; K02902 large subunit ribosomal protein L28
Displaying 12 items

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