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SCNpilot_cont_1000_bf_scaffold_1242_25

Organism: SCNPILOT_CONT_300_BF_Microbacterium_70_39_partial

partial RP 40 / 55 BSCG 40 / 51 MC: 1 ASCG 10 / 38
Location: comp(23628..24170)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma 70 n=1 Tax=Microbacterium sp. B19 RepID=UPI00034B32B9 similarity UNIREF
DB: UNIREF100
  • Identity: 63.7
  • Coverage: 179.0
  • Bit_score: 230
  • Evalue 1.80e-57
RNA polymerase sigma 70 {ECO:0000313|EMBL:KEP74150.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.0
  • Coverage: 179.0
  • Bit_score: 236
  • Evalue 2.70e-59
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 64.2
  • Coverage: 179.0
  • Bit_score: 227
  • Evalue 2.80e-57

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Taxonomy

Microbacterium sp. SUBG005 → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 543
ATGACGCTGGCCGAGGCATCCGACGGGATCCTCGCGCAGCGCGCCGCCGACGGGGATGCCGTGGCCTTCGGGGTTCTCGTGCGGCGGCACGGCCCGTTCTTCGTGGCGTTCGCGACGCGGCTCACGGGCTCGCGTGCGGATGCCGACGACGCCGTGCAGGAGGCGCTGATCACGGCGTGGGACAAGCTCGACGAGCTGACCGAGCCCGAGAGCGTTCGGGCGTGGATGCTGCGGATCGTGTCGCGCAAGGCCACCGACCGCCTGCGCAGCCGGCGTCCGGTCGCCGACATCGACGAGCTGGAACTGCCGGCGACGGTCGACGGCCCGGAGTCGCAGACCGTTGCCCATTCGCAGCTGGAGGCTCTCCGCGGCGCCCTCGCGACGCTGCCGGAAGAGGTGCGCACGGCCTGGCTGCTGCGCGAGGTCGGCGGGTACAGCTACGACGAGATCGCAGAGCAGACCGGAGTGCCCGCGGCGACCGTGCGCGGTCGGCTCGCGCGCGCCCGGCGTGCGCTGCTGGACTTGATGGAGGAGTGGAGGTGA
PROTEIN sequence
Length: 181
MTLAEASDGILAQRAADGDAVAFGVLVRRHGPFFVAFATRLTGSRADADDAVQEALITAWDKLDELTEPESVRAWMLRIVSRKATDRLRSRRPVADIDELELPATVDGPESQTVAHSQLEALRGALATLPEEVRTAWLLREVGGYSYDEIAEQTGVPAATVRGRLARARRALLDLMEEWR*