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SCNpilot_cont_1000_bf_scaffold_1177

Search features with annotation key words

Displaying items 1-30 of 53 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1177_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

148..498
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMK8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU64018.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1177_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

909..3590
DNA (2682bp) protein (894aa)
Mg(2+) transport ATPase, P-type {ECO:0000313|EMBL:CCU62188.1}; EC=3.6.3.2 {ECO:0000313|EMBL:CCU62188.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Mg(2+) transport ATPase, P-type n=1 Tax=Nitrosospira sp. APG3 RepID=M5DID6_9PROT rbh
magnesium-translocating P-type ATPase rbh
SCNpilot_cont_1000_bf_scaffold_1177_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3732..4532)
DNA (801bp) protein (267aa)
Malto-oligosyltrehalose synthase {ECO:0000313|EMBL:CCU62080.1}; EC=5.4.99.15 {ECO:0000313|EMBL:CCU62080.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase (EC:5.4.99.15 2.4.1.25); K00705 4-alpha-glucanotransferase [EC:2.4.1.25]; K06044 (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
Malto-oligosyltrehalose synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DRM4_9PROT rbh
SCNpilot_cont_1000_bf_scaffold_1177_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4567..6627)
DNA (2061bp) protein (687aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207, ECO:0000313|EMBL:KIO47904.1}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase (EC:5.4.99.15 2.4.1.25); K00705 4-alpha-glucanotransferase [EC:2.4.1.25]; K06044 (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15] rbh
Maltooligosyl trehalose synthase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y966_NITMU rbh
SCNpilot_cont_1000_bf_scaffold_1177_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6725..7657
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLY3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU64039.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_bf_scaffold_1177_6
unknown

Not on your lists

7739..8224
DNA (486bp) protein (162aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1177_7
unknown

Not on your lists

8255..8701
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1177_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8686..10596)
DNA (1911bp) protein (637aa)
Malto-oligosyltrehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Short=MTHase {ECO:0000256|PIRNR:PIRNR006337};; EC=3.2.1.141 {ECO:0000256|PIRNR:PIRNR006337};; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Maltooligosyl trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
alpha amylase catalytic subunit; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] rbh
Malto-oligosyltrehalose trehalohydrolase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMN0_9PROT rbh
SCNpilot_cont_1000_bf_scaffold_1177_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10615..13842)
DNA (3228bp) protein (1076aa)
alpha amylase domain-containing protein; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16] rbh
Trehalose synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DM19_9PROT rbh
Alpha-amylase {ECO:0000313|EMBL:KIO47902.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_bf_scaffold_1177_10
unknown

Not on your lists

14257..14607
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1177_11
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14725..15174)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8X2_NITMU
Trancriptional regulator, MarR family protein {ECO:0000313|EMBL:AKH39514.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1177_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15454..16479
DNA (1026bp) protein (342aa)
Fatty acid desaturase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN3_9PROT rbh
Fatty acid desaturase {ECO:0000313|EMBL:KIO48266.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Fatty acid desaturase rbh
SCNpilot_cont_1000_bf_scaffold_1177_13
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16574..16906)
DNA (333bp) protein (111aa)
Transposase Tn3 family protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZPK6_THASP
Transposase {ECO:0000313|EMBL:KJS38471.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
transposase Tn3 family protein
SCNpilot_cont_1000_bf_scaffold_1177_14
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17104..17421
DNA (318bp) protein (106aa)
SMR n=6 Tax=Gammaproteobacteria RepID=F2WU97_KLEPN
SMR {ECO:0000313|EMBL:AJT60364.1}; Small multidrug resistance protein {ECO:0000313|EMBL:AFQ90251.1}; Smr-2 {ECO:0000313|EMBL:AGM20436.1}; TaxID=550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae.;"
multidrug transporter
SCNpilot_cont_1000_bf_scaffold_1177_15
unknown

Not on your lists

17820..18122
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1177_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18066..19472)
DNA (1407bp) protein (469aa)
succinate-semialdehyde dehydrogenase (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
Succinate-semialdehyde dehydrogenase (NAD(P)(+)) n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZKQ6_9PROT rbh
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KIO48501.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_bf_scaffold_1177_17
unknown

Not on your lists

comp(19513..19611)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1177_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19612..20091)
DNA (480bp) protein (160aa)
4-oxalocrotonate tautomerase n=1 Tax=Methylomonas sp. MK1 RepID=UPI000380625D
4-oxalocrotonate tautomerase {ECO:0000313|EMBL:KIO48500.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1177_19
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20239..21144
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8Z6_NITMU rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABB74775.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_bf_scaffold_1177_20
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21273..21488
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G970_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ28338.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
SCNpilot_cont_1000_bf_scaffold_1177_21
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21449..21772
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JLW7_9GAMM
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEM49279.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
SCNpilot_cont_1000_bf_scaffold_1177_22
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21916..22692
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q470J4_CUPPJ
hypothetical protein; K06889
Uncharacterized protein {ECO:0000313|EMBL:AAZ61189.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_cont_1000_bf_scaffold_1177_23
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22750..23787)
DNA (1038bp) protein (346aa)
Hydroxyneurosporene-O-methyltransferase {ECO:0000313|EMBL:ABI59312.1}; EC=2.1.1.- {ECO:0000313|EMBL:ABI59312.1};; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
Hydroxyneurosporene-O-methyltransferase n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AH70_NITEC rbh
O-methyltransferase family protein rbh
SCNpilot_cont_1000_bf_scaffold_1177_24
unknown

Not on your lists

24243..25040
DNA (798bp) protein (266aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1177_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25289..25570
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ55_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62724.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1177_26
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25675..26577)
DNA (903bp) protein (301aa)
Esterase/lipase/thioesterase family active site protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8X4_NITMU rbh
Esterase {ECO:0000313|EMBL:KIO48225.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
esterase/lipase/thioesterase family protein rbh
SCNpilot_cont_1000_bf_scaffold_1177_27
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26641..27729)
DNA (1089bp) protein (363aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000313|EMBL:CCU64026.1}; EC=2.1.1.14 {ECO:0000313|EMBL:CCU64026.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKM7_9PROT rbh
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_1177_28
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28314..30395)
DNA (2082bp) protein (694aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXP8_9PROT rbh
Histidine kinase {ECO:0000313|EMBL:KIO48224.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
PAS/PAC sensor hybrid histidine kinase rbh
SCNpilot_cont_1000_bf_scaffold_1177_29
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30683..33181
DNA (2499bp) protein (833aa)
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:ABB74793.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ABB74793.1};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8X8_NITMU rbh
PAS/PAC sensor hybrid histidine kinase rbh
SCNpilot_cont_1000_bf_scaffold_1177_30
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33269..34507
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Bordetella bronchiseptica 1289 RepID=K4U1I9_BORBO rbh
hypothetical protein; K07223 putative iron-dependent peroxidase rbh
Uncharacterized protein {ECO:0000313|EMBL:CAE36711.1}; TaxID=257311 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;"
Displaying items 1-30 of 53 in total

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