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SCNpilot_cont_1000_bf_scaffold_1272

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1272_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..392)
DNA (390bp) protein (130aa)
FIG123464: Polysaccharide export protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DX76_9PROT
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIO49388.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
polysaccharide export protein; K01991 polysaccharide export outer membrane protein
SCNpilot_cont_1000_bf_scaffold_1272_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

939..1445
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y601_NITMU
Phosphotransferase {ECO:0000313|EMBL:KIO49474.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K06925 UPF0079 ATP-binding protein
SCNpilot_cont_1000_bf_scaffold_1272_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1409..2794
DNA (1386bp) protein (462aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CCU63838.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CCU63838.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] rbh
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DM81_9PROT rbh
SCNpilot_cont_1000_bf_scaffold_1272_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3176..4393
DNA (1218bp) protein (406aa)
Acriflavin resistance protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLF9_9PROT rbh
Hemolysin secretion protein D {ECO:0000313|EMBL:KIO49390.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Secretion protein HlyD rbh
SCNpilot_cont_1000_bf_scaffold_1272_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5087..6211
DNA (1125bp) protein (375aa)
ABC-type antimicrobial peptide transport system,permease component n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLK6_9PROT rbh
ABC-type antimicrobial peptide transport system,permease component {ECO:0000313|EMBL:CCU63842.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ABC transporter permease rbh
SCNpilot_cont_1000_bf_scaffold_1272_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6239..7405
DNA (1167bp) protein (389aa)
ABC-type antimicrobial peptide transport system,permease component n=1 Tax=Nitrosospira sp. APG3 RepID=M5DM84_9PROT rbh
Multidrug ABC transporter permease {ECO:0000313|EMBL:KIO49392.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
lipoprotein release ABC transporter permease rbh
SCNpilot_cont_1000_bf_scaffold_1272_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7441..7980)
DNA (540bp) protein (180aa)
MutT/nudix family protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLG2_9PROT
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:KIO49393.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
NUDIX hydrolase
SCNpilot_cont_1000_bf_scaffold_1272_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8096..9265)
DNA (1170bp) protein (390aa)
COGs COG3146 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DX82_9PROT rbh
COGs COG3146 {ECO:0000313|EMBL:CCU63845.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K09919 hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_1272_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9483..11105
DNA (1623bp) protein (541aa)
NAD synthetase {ECO:0000313|EMBL:KIO49394.1}; EC=6.3.5.1 {ECO:0000313|EMBL:KIO49394.1};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
NAD+ synthetase (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] rbh
NAD synthetase / Glutamine amidotransferase chain of NAD synthetase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLL0_9PROT rbh
SCNpilot_cont_1000_bf_scaffold_1272_10
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11314..11652
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5Z6_NITMU
nitrogen regulatory protein P-II (GlnB, GlnK); K04751 nitrogen regulatory protein P-II 1
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:ABB75825.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_bf_scaffold_1272_11
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11926..13437
DNA (1512bp) protein (504aa)
Peptidase M48, Ste24p n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5Z5_NITMU rbh
peptidase M48, Ste24p rbh
Peptidase M48, Ste24p {ECO:0000313|EMBL:ABB75826.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_bf_scaffold_1272_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13651..14799
DNA (1149bp) protein (383aa)
Macrolide-specific efflux protein MacA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DX86_9PROT rbh
RND transporter {ECO:0000313|EMBL:KIO49397.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein rbh
SCNpilot_cont_1000_bf_scaffold_1272_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14821..15558
DNA (738bp) protein (246aa)
Macrolide export ATP-binding/permease protein MacB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK65_9PROT rbh
Macrolide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIO49398.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ABC transporter; K02003 putative ABC transport system ATP-binding protein rbh
SCNpilot_cont_1000_bf_scaffold_1272_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15555..16778
DNA (1224bp) protein (408aa)
Macrolide export ATP-binding/permease protein MacB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLL4_9PROT rbh
Macrolide export ATP-binding/permease protein MacB {ECO:0000313|EMBL:CCU63852.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K02004 putative ABC transport system permease protein rbh
SCNpilot_cont_1000_bf_scaffold_1272_15
unknown

Not on your lists

16911..17156
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1272_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17242..18969)
DNA (1728bp) protein (576aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000313|EMBL:KIO49405.1};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {E
glucosamine--fructose-6-phosphate aminotransferase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] rbh
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Nitrosospira sp. APG3 RepID=M5DX90_9PROT rbh
SCNpilot_cont_1000_bf_scaffold_1272_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19029..20393)
DNA (1365bp) protein (455aa)
UDP-N-acetylglucosamine pyrophosphorylase (EC:2.7.7.23); K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] rbh
Bifunctional protein GlmU n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK69_9PROT rbh
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_bf_scaffold_1272_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20647..21063)
DNA (417bp) protein (139aa)
atpC; F0F1 ATP synthase subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
ATP synthase epsilon chain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLM1_9PROT
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_bf_scaffold_1272_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21128..22507)
DNA (1380bp) protein (460aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
F0F1 ATP synthase subunit beta (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14] rbh
ATP synthase subunit beta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DM93_9PROT rbh
SCNpilot_cont_1000_bf_scaffold_1272_20
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22535..23251)
DNA (717bp) protein (239aa)
ATP synthase gamma chain (EC:3.6.3.14); K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14]
F0F1 ATP synthase subunit gamma n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036A21BB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_cont_1000_bf_scaffold_1272_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23255..24796)
DNA (1542bp) protein (514aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346, ECO:0000313|EMBL:KIO49410.1};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
F0F1 ATP synthase subunit alpha (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] rbh
ATP synthase subunit alpha 1 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=ATPA1_NITMU rbh
SCNpilot_cont_1000_bf_scaffold_1272_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24811..25347)
DNA (537bp) protein (179aa)
ATP synthase F1 subunit delta; K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]
ATP synthase subunit delta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK73_9PROT
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_bf_scaffold_1272_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25351..25821)
DNA (471bp) protein (157aa)
F0F1 ATP synthase subunit B; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14]
ATP synthase subunit b n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLN0_9PROT
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_bf_scaffold_1272_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25857..26129)
DNA (273bp) protein (91aa)
F0F1 ATP synthase subunit C; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
ATP synthase C chain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DM96_9PROT
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242778}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_bf_scaffold_1272_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26188..26994)
DNA (807bp) protein (269aa)
F0F1 ATP synthase subunit A (EC:3.6.3.14); K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14] rbh
ATP synthase subunit a n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLJ5_9PROT rbh
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_bf_scaffold_1272_26
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27027..27398)
DNA (372bp) protein (124aa)
ATP synthase protein I n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCB0_NITMU
ATP synthase protein I; K02116 ATP synthase protein I
ATP synthase protein I {ECO:0000313|EMBL:ABB73611.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_bf_scaffold_1272_27
unknown

Not on your lists

27549..27746
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1272_28
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27912..28373)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXA3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63870.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1272_29
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28493..28735)
DNA (243bp) protein (81aa)
Polysaccharide deacetylase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCB2_NITMU
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:KIO49477.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Displaying 29 items

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