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SCNpilot_cont_1000_bf_scaffold_1479

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Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1479_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2..796
DNA (795bp) protein (265aa)
ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKY7_9PROT rbh
ABC transporter permease {ECO:0000313|EMBL:KIO50103.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K02066 putative ABC transport system permease protein rbh
SCNpilot_cont_1000_bf_scaffold_1479_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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796..1560
DNA (765bp) protein (255aa)
Methionine ABC transporter ATP-binding protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKA5_9PROT rbh
Iron ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIO49900.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ABC transporter-like protein; K02065 putative ABC transport system ATP-binding protein rbh
SCNpilot_cont_1000_bf_scaffold_1479_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1580..2497
DNA (918bp) protein (306aa)
Mce related protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVB0_9PROT rbh
Mammalian cell entry protein {ECO:0000313|EMBL:KIO49901.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K02067 putative ABC transport system substrate-binding protein rbh
SCNpilot_cont_1000_bf_scaffold_1479_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2509..3144
DNA (636bp) protein (212aa)
Putative lipoprotein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIT6_9PROT
Putative lipoprotein {ECO:0000313|EMBL:CCU63256.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
putative lipoprotein
SCNpilot_cont_1000_bf_scaffold_1479_5
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3215..4555
DNA (1341bp) protein (447aa)
Putative Subtilisin {ECO:0000313|EMBL:CBS89844.1}; EC=3.4.21.62 {ECO:0000313|EMBL:CBS89844.1};; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Putative Subtilisin n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDZ6_AZOL4 rbh
putative Subtilisin rbh
SCNpilot_cont_1000_bf_scaffold_1479_6
unknown

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4576..4884
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1479_7
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4951..5691)
DNA (741bp) protein (247aa)
Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NT01_CHRVO
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AAQ60928.1}; TaxID=243365 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /; NBRC 12614 / NCIMB 9131 / NCTC 9757).;"
SCNpilot_cont_1000_bf_scaffold_1479_8
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5716..7173)
DNA (1458bp) protein (486aa)
Polyphenol oxidase b (Catechol oxidase) oxidoreductase protein n=1 Tax=Pseudomonas putida CSV86 RepID=L1M1P5_PSEPU rbh
Polyphenol oxidase b (Catechol oxidase) oxidoreductase protein {ECO:0000313|EMBL:EKX84901.1}; TaxID=1005395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida CSV86.;"
polyphenol oxidase b precursor (catechol oxidase) oxidoreductase
SCNpilot_cont_1000_bf_scaffold_1479_9
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7270..8301)
DNA (1032bp) protein (344aa)
FAD dependent oxidoreductase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09D56_STIAD
fad dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:EAU69666.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
SCNpilot_cont_1000_bf_scaffold_1479_10
Tolypothrix bouteillei, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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comp(8364..10652)
DNA (2289bp) protein (763aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00034DC2AD rbh
Uncharacterized protein {ECO:0000313|EMBL:KIE12404.1}; TaxID=1479485 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix bouteillei VB521301.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_1479_11
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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10867..11916
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7J1_NITMU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB75280.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_bf_scaffold_1479_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11964..12641)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKD7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63257.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1479_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12697..13641)
DNA (945bp) protein (315aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8] rbh
Lipoyl synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKY9_9PROT rbh
SCNpilot_cont_1000_bf_scaffold_1479_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13694..14404)
DNA (711bp) protein (237aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" sour
lipB; lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
Octanoyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKA8_9PROT rbh
SCNpilot_cont_1000_bf_scaffold_1479_15
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14401..14649)
DNA (249bp) protein (83aa)
UPF0250 protein Nit79A3_2239 n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GDC0_NITSI
hypothetical protein; K09158 hypothetical protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
SCNpilot_cont_1000_bf_scaffold_1479_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14646..15515)
DNA (870bp) protein (290aa)
D-alanine aminotransferase {ECO:0000313|EMBL:CCU63261.1}; EC=2.6.1.21 {ECO:0000313|EMBL:CCU63261.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
class IV aminotransferase; K00824 D-alanine transaminase [EC:2.6.1.21] rbh
D-alanine aminotransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIT9_9PROT rbh
SCNpilot_cont_1000_bf_scaffold_1479_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15651..16811)
DNA (1161bp) protein (387aa)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CCU63262.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CCU63262.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] rbh
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKE1_9PROT rbh
Displaying 17 items

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