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SCNpilot_cont_1000_bf_scaffold_900

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_900_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34..3204)
DNA (3171bp) protein (1057aa)
Putative exported protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH47_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:KIO48816.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_900_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3370..3570)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFE3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61846.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_900_3
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3807..4784
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5K3_NITMU rbh
hypothetical protein; K07090 rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB75968.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_bf_scaffold_900_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4832..5278
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH49_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61849.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_bf_scaffold_900_5
delta proteobacterium MLMS-1, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5385..5669
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NLX4_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EAT02703.1}; TaxID=262489 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium MLMS-1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_900_6
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5889..6353)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) RepID=D0L4J0_GORB4
Uncharacterized protein {ECO:0000313|EMBL:EXI78524.1}; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_900_7
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6453..8006)
DNA (1554bp) protein (518aa)
HsdR family type I site-specific deoxyribonuclease; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] rbh
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JS27_9GAMM rbh
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:AEM46535.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
SCNpilot_cont_1000_bf_scaffold_900_trna_1
unknown

Not on your lists

comp(8619..8691)
DNA (73bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_900_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8858..9961
DNA (1104bp) protein (368aa)
Glycine oxidase ThiO {ECO:0000313|EMBL:CCU61889.1}; EC=1.4.3.19 {ECO:0000313|EMBL:CCU61889.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
FAD dependent oxidoreductase; K03153 glycine oxidase [EC:1.4.3.19] rbh
Glycine oxidase ThiO n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH78_9PROT rbh
SCNpilot_cont_1000_bf_scaffold_900_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10086..10811
DNA (726bp) protein (242aa)
Probable transcriptional regulatory protein EBAPG3_9170 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHP1_9PROT rbh
Probable transcriptional regulatory protein SQ11_09615 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_900_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10815..11384
DNA (570bp) protein (190aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Crossover junction endodeoxyribonuclease ruvC; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHD2_9PROT
SCNpilot_cont_1000_bf_scaffold_900_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11381..11983
DNA (603bp) protein (201aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ruvA; Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] rbh
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RUVA_NITMU rbh
SCNpilot_cont_1000_bf_scaffold_900_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12132..13196
DNA (1065bp) protein (355aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] rbh
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR26_9PROT rbh
SCNpilot_cont_1000_bf_scaffold_900_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13288..13728
DNA (441bp) protein (147aa)
4-hydroxybenzoyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
4-hydroxybenzoyl-CoA thioesterase family active site n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHN7_9PROT
4-hydroxybenzoyl-CoA thioesterase family active site {ECO:0000313|EMBL:CCU61883.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_bf_scaffold_900_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13725..14411
DNA (687bp) protein (229aa)
MotA/TolQ/ExbB proton channel family protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHC8_9PROT rbh
Protein tolQ {ECO:0000313|EMBL:KIO48786.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
MotA/TolQ/ExbB proton channel; K03562 biopolymer transport protein TolQ rbh
SCNpilot_cont_1000_bf_scaffold_900_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14460..14897
DNA (438bp) protein (146aa)
Tol biopolymer transport system, TolR protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFF6_9PROT
Tol biopolymer transport system, TolR protein {ECO:0000313|EMBL:CCU61881.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR
SCNpilot_cont_1000_bf_scaffold_900_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14924..15808
DNA (885bp) protein (295aa)
TolA protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR20_9PROT rbh
Cell envelope protein TolA {ECO:0000313|EMBL:KIO48835.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
TonB-like protein; K03646 colicin import membrane protein
SCNpilot_cont_1000_bf_scaffold_900_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15852..17156
DNA (1305bp) protein (435aa)
Protein TolB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH71_9PROT rbh
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
tolB; translocation protein TolB; K03641 TolB protein rbh
SCNpilot_cont_1000_bf_scaffold_900_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17197..17715
DNA (519bp) protein (173aa)
18K peptidoglycan-associated outer membrane lipoprotein Peptidoglycan-associated lipoprotein Outer membrane protein P6 OmpA/MotB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHN3_9PROT
Peptidoglycan-binding protein {ECO:0000313|EMBL:KIO48788.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
OmpA/MotB; K03640 peptidoglycan-associated lipoprotein
SCNpilot_cont_1000_bf_scaffold_900_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17719..18585
DNA (867bp) protein (289aa)
TPR repeat containing exported protein Putative periplasmic protein contains a protein prenylyltransferase domain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHC7_9PROT rbh
TPR repeat containing exported protein Putative periplasmic protein contains a protein prenylyltransferase domain {ECO:0000313|EMBL:CCU61877.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_900_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18689..19345
DNA (657bp) protein (219aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917, ECO:0000313|EMBL:KIO48837.1}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFF4_9PROT rbh
radical SAM family protein; K10026 queuosine biosynthesis protein QueE rbh
SCNpilot_cont_1000_bf_scaffold_900_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19432..20118
DNA (687bp) protein (229aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
7-cyano-7-deazaguanine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR15_9PROT rbh
ExsB; K06920 queuosine biosynthesis protein QueC rbh
SCNpilot_cont_1000_bf_scaffold_900_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20132..20830
DNA (699bp) protein (233aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6); K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6] rbh
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH67_9PROT rbh
SCNpilot_cont_1000_bf_scaffold_900_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20814..20996
DNA (183bp) protein (61aa)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
arginyl-tRNA-protein transferase (EC:2.3.2.8); K00685 arginine-tRNA-protein transferase [EC:2.3.2.8]
Putative arginyl-tRNA--protein transferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=ATE_NITMU
Displaying 24 items

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