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SCNpilot_cont_1000_bf_scaffold_11445

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_11445_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..1582)
DNA (1581bp) protein (527aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] rbh
Putative DNA ligase family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W172_9GAMM rbh
Putative DNA ligase family protein {ECO:0000313|EMBL:EIL93213.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_1000_bf_scaffold_11445_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1589..1885)
DNA (297bp) protein (99aa)
Short chain dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W173_9GAMM
Short chain dehydrogenase {ECO:0000313|EMBL:EIL93214.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative short-chain dehydrogenase/reductase
SCNpilot_cont_1000_bf_scaffold_11445_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2040..2570
DNA (531bp) protein (177aa)
Probable DNA repair protein UU7_09515 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W174_9GAMM
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative Ku domain-containing protein
SCNpilot_cont_1000_bf_scaffold_11445_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2597..2800
DNA (204bp) protein (68aa)
Probable DNA repair protein UU7_09515 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W174_9GAMM
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA repair protein; K10979 DNA end-binding protein Ku
SCNpilot_cont_1000_bf_scaffold_11445_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3072..3440)
DNA (369bp) protein (123aa)
GAF sensor hybrid histidine kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W180_9GAMM
GAF sensor hybrid histidine kinase {ECO:0000313|EMBL:EIL93221.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator
SCNpilot_cont_1000_bf_scaffold_11445_6
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3531..4685)
DNA (1155bp) protein (385aa)
Small-conductance mechanosensitive ion channel n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6E3_9GAMM
mechanosensitive ion channel protein MscS
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_cont_1000_bf_scaffold_11445_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4957..5160
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W183_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93224.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_1000_bf_scaffold_11445_8
unknown

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5157..5477
DNA (321bp) protein (107aa)

This feature has no annotations

Displaying 8 items

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