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SCNpilot_cont_1000_bf_scaffold_10806

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_10806_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..176)
DNA (174bp) protein (58aa)
50S ribosomal protein L6 n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=RL6_RHOP5
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
50S ribosomal protein L6 {ECO:0000255|HAMAP-Rule:MF_01365}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_1000_bf_scaffold_10806_2
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(176..574)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RS8_HYPNA
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_cont_1000_bf_scaffold_10806_3
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(589..894)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y217_9PROT
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
SCNpilot_cont_1000_bf_scaffold_10806_4
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(902..1558)
DNA (657bp) protein (219aa)
50S ribosomal protein L5 n=1 Tax=Methylocystis parvus RepID=UPI0002F19735
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000313|EMBL:CCJ06718.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_1000_bf_scaffold_10806_5
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1551..1865)
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWB8_9RHIZ
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
SCNpilot_cont_1000_bf_scaffold_10806_6
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1865..2233)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035C5210
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_cont_1000_bf_scaffold_10806_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2261..2503)
DNA (243bp) protein (81aa)
30S ribosomal protein S17 n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QTQ1_METTR
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
30S ribosomal protein S17 {ECO:0000255|HAMAP-Rule:MF_01345}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_bf_scaffold_10806_8
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2523..2735)
DNA (213bp) protein (71aa)
50S ribosomal protein L29 n=1 Tax=Amorphus coralli RepID=UPI00035D6F40
rpmC; 50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
50S ribosomal protein L29 {ECO:0000255|HAMAP-Rule:MF_00374}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_cont_1000_bf_scaffold_10806_9
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2736..3149)
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RML7_9RHIZ
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
Displaying 9 items

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