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SCNpilot_cont_1000_bf_scaffold_5291

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_5291_1
unknown

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comp(1..129)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_5291_2
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(126..386)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FZ74_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EAU40404.1}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_5291_3
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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529..903
DNA (375bp) protein (125aa)
chemotaxis protein CheY n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B77519
Chemotaxis protein CheV {ECO:0000313|EMBL:BAQ17668.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
response regulator receiver protein; K11443 two-component system, cell cycle response regulator DivK
SCNpilot_cont_1000_bf_scaffold_5291_4
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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908..2083
DNA (1176bp) protein (392aa)
Pole remodelling regulatory diguanylate cyclase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PNT1_9RHOB
Pole remodelling regulatory diguanylate cyclase {ECO:0000313|EMBL:CDO61436.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
response regulator receiver modulated diguanylate cyclase; K02488 two-component system, cell cycle response regulator
SCNpilot_cont_1000_bf_scaffold_5291_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1935..2276)
DNA (342bp) protein (114aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_1000_bf_scaffold_5291_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2303..3085)
DNA (783bp) protein (261aa)
exodeoxyribonuclease III Xth; K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
Exodeoxyribonuclease III Xth n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXJ2_PARL1 rbh
Exodeoxyribonuclease III Xth {ECO:0000313|EMBL:ABS64625.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_bf_scaffold_5291_7
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3212..4534
DNA (1323bp) protein (441aa)
prolyl-tRNA synthetase; K01881 prolyl-tRNA synthetase [EC:6.1.1.15]
Proline--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_01570}; EC=6.1.1.15 {ECO:0000255|HAMAP-Rule:MF_01570};; Prolyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_01570}; Short=ProRS {ECO:0000255|HAMAP-Rule:MF_01570};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
Proline--tRNA ligase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=SYP_BEII9
SCNpilot_cont_1000_bf_scaffold_5291_8
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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4561..4857
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JAX5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAK43537.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_5291_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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4861..5145
DNA (285bp) protein (95aa)
addiction module antitoxin n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AC70
transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_cont_1000_bf_scaffold_5291_10
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5151..6413
DNA (1263bp) protein (421aa)
ABC-type transport system, involved in lipoprotein release, permease component n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QUG7_9BRAD
Lipoprotein releasing system, transmembrane protein, LolC/E family {ECO:0000313|EMBL:EHR03658.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein; K09808 lipoprotein-releasing system permease protein
SCNpilot_cont_1000_bf_scaffold_5291_11
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6406..6939
DNA (534bp) protein (178aa)
ABC transporter-like protein; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-]
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
Lipoprotein releasing system ATP-binding protein LolD n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QZF0_9RHIZ
SCNpilot_cont_1000_bf_scaffold_5291_12
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6966..7868
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003722520
Uncharacterized protein {ECO:0000313|EMBL:KFD28407.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
Displaying 12 items

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