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SCNPILOT_CONT_300_BF_Rhizobiales_62_8

SCNPILOT_CONT_1000_BF_Alphaproteobacteria_61_44
In projects: SCNPILOT_CONT_1000_BF

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_1000_bf_UNK

Properties

Avg. coverage: 44.11 Longest contig: 21.21 Kbp Bin length: 1.25 Mbp GC content: 61.39 %
Contigs count: 413 Features count: 1549 rRNAs count: 0 tRNAs count: 4

Genome completeness

partial RP 28 / 55 BSCG 27 / 51 ASCG 5 / 38
Displaying items 101-150 of 413 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_1000_bf_scaffold_2139
Class: Alphaproteobacteria (69.23%)
13 10957 bp 61.81 53.12 87.97
SCNpilot_cont_1000_bf_scaffold_17863 5 2271 bp 61.29 42.05 87.98
SCNpilot_cont_1000_bf_scaffold_25908
Order: Rhodospirillales (50%)
4 1725 bp 58.20 58.55 88.17
SCNpilot_cont_1000_bf_scaffold_41888
Species: Candidatus Phaeomarinobacter ectocarpi (50%)
2 1201 bp 60.37 51.21 88.18
SCNpilot_cont_1000_bf_scaffold_40397
Class: Alphaproteobacteria (100%)
3 1235 bp 64.86 53.44 88.18
SCNpilot_cont_1000_bf_scaffold_17729
Class: Alphaproteobacteria (50%)
4 3649 bp 60.62 47.00 88.30
SCNpilot_cont_1000_bf_scaffold_22826
Class: Alphaproteobacteria (66.67%)
3 1899 bp 63.56 45.29 88.31
SCNpilot_cont_1000_bf_scaffold_15956
Species: Sphingopyxis sp. LC81 (50%)
2 3324 bp 60.32 30.01 88.36
SCNpilot_cont_1000_bf_scaffold_13737
Class: Alphaproteobacteria (50%)
4 2718 bp 60.38 46.45 88.52
SCNpilot_cont_1000_bf_scaffold_7397
Phylum: Proteobacteria (80%)
5 4031 bp 61.60 45.34 88.56
SCNpilot_cont_1000_bf_scaffold_2106
Class: Alphaproteobacteria (79.17%)
24 21207 bp 62.49 50.05 88.61
SCNpilot_cont_1000_bf_scaffold_33238
Species: Azorhizobium caulinodans (50%)
2 1432 bp 62.29 35.27 88.62
SCNpilot_cont_1000_bf_scaffold_16936
Species: Sphingomonas wittichii (100%)
1 2355 bp 55.84 40.02 88.79
SCNpilot_cont_1000_bf_scaffold_13205
Phylum: Proteobacteria (71.43%)
7 4949 bp 60.82 46.37 88.87
SCNpilot_cont_1000_bf_scaffold_4936
Class: Alphaproteobacteria (71.43%)
7 8184 bp 60.73 50.01 88.89
SCNpilot_cont_1000_bf_scaffold_6707
Class: Alphaproteobacteria (66.67%)
9 4295 bp 61.44 51.57 88.92
SCNpilot_cont_1000_bf_scaffold_28696
Species: Azoarcus sp. KH32C (50%)
2 1599 bp 66.17 50.97 88.93
SCNpilot_cont_1000_bf_scaffold_12082
Order: Caulobacterales (50%)
4 2961 bp 62.21 41.62 88.96
SCNpilot_cont_1000_bf_scaffold_927
Class: Alphaproteobacteria (57.69%)
26 18935 bp 59.18 26.19 89.02
SCNpilot_cont_1000_bf_scaffold_30948
Species: Parvibaculum lavamentivorans (50%)
2 1512 bp 60.91 40.84 89.29
SCNpilot_cont_1000_bf_scaffold_3607
Class: Alphaproteobacteria (84.62%)
13 10426 bp 60.82 44.58 89.29
SCNpilot_cont_1000_bf_scaffold_12366
Order: Rhizobiales (60%)
5 2918 bp 63.98 56.20 89.34
SCNpilot_cont_1000_bf_scaffold_12352
Order: Rhodospirillales (50%)
6 5762 bp 59.02 36.06 89.34
SCNpilot_cont_1000_bf_scaffold_12043
Order: Rhizobiales (66.67%)
6 5235 bp 59.35 40.88 89.40
SCNpilot_cont_1000_bf_scaffold_18467
Species: Rhodoferax ferrireducens (50%)
2 2219 bp 61.24 57.46 89.50
SCNpilot_cont_1000_bf_scaffold_3148
Class: Alphaproteobacteria (80%)
20 21147 bp 58.19 39.30 89.52
SCNpilot_cont_1000_bf_scaffold_37788
Species: Caulobacter vibrioides (50%)
2 1300 bp 63.15 45.00 89.54
SCNpilot_cont_1000_bf_scaffold_40086
Class: Alphaproteobacteria (66.67%)
3 1243 bp 59.13 26.15 89.54
SCNpilot_cont_1000_bf_scaffold_8970
Species: Sphingomonas changbaiensis (50%)
2 3578 bp 60.09 46.81 89.55
SCNpilot_cont_1000_bf_scaffold_14612
Class: Alphaproteobacteria (60%)
5 4407 bp 61.18 46.40 89.58
SCNpilot_cont_1000_bf_scaffold_27402
Class: Alphaproteobacteria (66.67%)
3 2758 bp 61.89 49.76 89.63
SCNpilot_cont_1000_bf_scaffold_15433
Phylum: Proteobacteria (50%)
6 3865 bp 60.44 39.26 89.65
SCNpilot_cont_1000_bf_scaffold_47218
Species: Chthoniobacter flavus (100%)
1 1082 bp 59.80 29.81 89.83
SCNpilot_cont_1000_bf_scaffold_32086
Species: Rhodovulum sp. NI22 (50%)
2 1471 bp 63.97 49.97 89.94
SCNpilot_cont_1000_bf_scaffold_28826
Species: alpha proteobacterium MA2 (50%)
2 1594 bp 61.86 55.05 89.96
SCNpilot_cont_1000_bf_scaffold_13748
Class: Alphaproteobacteria (50%)
6 2716 bp 63.33 43.08 90.02
SCNpilot_cont_1000_bf_scaffold_41391
Species: Bosea sp. LC85 (50%)
2 1212 bp 59.74 20.01 90.10
SCNpilot_cont_1000_bf_scaffold_41418
Species: R_NC10_66_22 (50%)
2 1212 bp 60.40 36.30 90.10
SCNpilot_cont_1000_bf_scaffold_18716
Class: Alphaproteobacteria (66.67%)
3 2197 bp 59.13 51.66 90.12
SCNpilot_cont_1000_bf_scaffold_17334
Class: Alphaproteobacteria (100%)
4 3836 bp 60.56 46.08 90.17
SCNpilot_cont_1000_bf_scaffold_11381
Class: Alphaproteobacteria (83.33%)
6 5619 bp 61.59 50.05 90.23
SCNpilot_cont_1000_bf_scaffold_37835
Class: Alphaproteobacteria (50%)
4 1991 bp 62.13 46.08 90.26
SCNpilot_cont_1000_bf_scaffold_38627
Class: Alphaproteobacteria (66.67%)
3 2038 bp 56.97 31.89 90.38
SCNpilot_cont_1000_bf_scaffold_32502
Class: Alphaproteobacteria (66.67%)
3 1457 bp 60.60 42.55 90.39
SCNpilot_cont_1000_bf_scaffold_8879
Order: Rhizobiales (50%)
4 3599 bp 63.18 44.32 90.44
SCNpilot_cont_1000_bf_scaffold_39745
Species: Maricaulis maris (50%)
2 1250 bp 61.36 38.00 90.48
SCNpilot_cont_1000_bf_scaffold_30178
Order: Caulobacterales (50%)
4 1541 bp 61.52 49.64 90.53
SCNpilot_cont_1000_bf_scaffold_15225
Phylum: Proteobacteria (62.5%)
8 4484 bp 59.43 53.91 90.59
SCNpilot_cont_1000_bf_scaffold_51159
Species: alpha proteobacterium MA2 (50%)
2 1000 bp 62.20 46.50 90.60
SCNpilot_cont_1000_bf_scaffold_35364
Species: Bradyrhizobium sp. LTSPM299 (50%)
2 1367 bp 61.59 47.73 90.64
Displaying items 101-150 of 413 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.