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SCNPILOT_CONT_300_BF_Rhizobiales_62_8

SCNPILOT_CONT_1000_BF_Alphaproteobacteria_61_44
In projects: SCNPILOT_CONT_1000_BF

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_1000_bf_UNK

Properties

Avg. coverage: 44.11 Longest contig: 21.21 Kbp Bin length: 1.25 Mbp GC content: 61.39 %
Contigs count: 413 Features count: 1549 rRNAs count: 0 tRNAs count: 4

Genome completeness

partial RP 28 / 55 BSCG 27 / 51 ASCG 5 / 38
Displaying items 151-200 of 413 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_1000_bf_scaffold_48567
Species: Sphingomonas taxi (50%)
2 1052 bp 56.56 23.76 90.68
SCNpilot_cont_1000_bf_scaffold_31133
Species: Parvibaculum lavamentivorans (50%)
2 1505 bp 62.66 58.80 90.70
SCNpilot_cont_1000_bf_scaffold_13031
Class: Alphaproteobacteria (100%)
3 2817 bp 65.25 50.76 90.73
SCNpilot_cont_1000_bf_scaffold_46628
Phylum: Proteobacteria (66.67%)
3 1094 bp 63.44 36.11 90.77
SCNpilot_cont_1000_bf_scaffold_17909
Class: Alphaproteobacteria (66.67%)
3 2267 bp 62.02 44.33 90.78
SCNpilot_cont_1000_bf_scaffold_8693
Class: Alphaproteobacteria (100%)
7 5879 bp 61.37 46.86 90.83
SCNpilot_cont_1000_bf_scaffold_2998
Class: Alphaproteobacteria (81.82%)
11 12402 bp 61.77 43.88 90.83
SCNpilot_cont_1000_bf_scaffold_12093
Order: Rhizobiales (50%)
6 3876 bp 63.70 47.15 90.87
SCNpilot_cont_1000_bf_scaffold_12010
Order: Rhizobiales (50%)
6 4869 bp 61.78 47.29 90.88
SCNpilot_cont_1000_bf_scaffold_27324
Class: Alphaproteobacteria (50%)
4 2789 bp 61.78 45.27 90.89
SCNpilot_cont_1000_bf_scaffold_3280
Class: Alphaproteobacteria (71.43%)
7 6470 bp 60.20 48.72 90.93
SCNpilot_cont_1000_bf_scaffold_28853
Phylum: Proteobacteria (66.67%)
3 1593 bp 63.40 43.47 90.96
SCNpilot_cont_1000_bf_scaffold_21525
Order: Rhizobiales (66.67%)
3 1985 bp 61.61 56.80 90.98
SCNpilot_cont_1000_bf_scaffold_29791
Class: Alphaproteobacteria (66.67%)
3 2713 bp 62.07 46.90 91.01
SCNpilot_cont_1000_bf_scaffold_5113
Phylum: Proteobacteria (80%)
5 5004 bp 62.25 52.61 91.01
SCNpilot_cont_1000_bf_scaffold_3040
Class: Alphaproteobacteria (85.71%)
7 6737 bp 61.67 42.38 91.06
SCNpilot_cont_1000_bf_scaffold_14524
Order: Rhizobiales (66.67%)
3 2619 bp 62.35 44.86 91.07
SCNpilot_cont_1000_bf_scaffold_3801
Order: Rhizobiales (60%)
5 5925 bp 64.27 54.43 91.09
SCNpilot_cont_1000_bf_scaffold_49802
Species: Candidatus Phaeomarinobacter ectocarpi (50%)
2 1027 bp 59.79 43.33 91.14
SCNpilot_cont_1000_bf_scaffold_27207
Species: Burkholderia gladioli (50%)
2 1665 bp 59.76 27.93 91.17
SCNpilot_cont_1000_bf_scaffold_40192
Species: R_Phenylobacterium_69_31 (50%)
2 1240 bp 60.48 43.15 91.21
SCNpilot_cont_1000_bf_scaffold_48464
Species: Hyphomicrobium denitrificans (100%)
2 1055 bp 66.82 47.87 91.28
SCNpilot_cont_1000_bf_scaffold_46627
Species: Devosia chinhatensis (50%)
2 1094 bp 62.61 34.05 91.32
SCNpilot_cont_1000_bf_scaffold_35281
Species: Rhodospirillum centenum (50%)
2 1369 bp 60.63 26.11 91.38
SCNpilot_cont_1000_bf_scaffold_45642
Species: Hyphomonas sp. BRH_c22 (50%)
2 1116 bp 61.56 25.76 91.40
SCNpilot_cont_1000_bf_scaffold_2366
Class: Alphaproteobacteria (50%)
6 7880 bp 58.41 26.84 91.41
SCNpilot_cont_1000_bf_scaffold_9674
Species: Phenylobacterium zucineum (50%)
2 3416 bp 61.97 45.30 91.42
SCNpilot_cont_1000_bf_scaffold_27905 3 1633 bp 63.81 28.78 91.49
SCNpilot_cont_1000_bf_scaffold_1625
Order: Rhizobiales (62.5%)
8 10075 bp 62.49 46.53 91.56
SCNpilot_cont_1000_bf_scaffold_13760
Class: Alphaproteobacteria (50%)
4 2714 bp 64.66 50.94 91.75
SCNpilot_cont_1000_bf_scaffold_37627
Species: Roseobacter sp. AzwK-3b (50%)
2 1304 bp 63.88 49.27 91.79
SCNpilot_cont_1000_bf_scaffold_49366
Species: Sphingomonas taxi (100%)
1 1036 bp 67.37 33.78 91.80
SCNpilot_cont_1000_bf_scaffold_7408
Order: Caulobacterales (50%)
6 4028 bp 62.26 49.90 91.83
SCNpilot_cont_1000_bf_scaffold_15024
Species: alpha proteobacterium U9-1i (50%)
2 2557 bp 57.68 43.51 91.87
SCNpilot_cont_1000_bf_scaffold_44735
Species: BJP_08E140C01_Xanthomonadales_64_42 (50%)
2 1136 bp 62.59 54.36 91.90
SCNpilot_cont_1000_bf_scaffold_3090
Order: Rhizobiales (50%)
6 6668 bp 61.67 50.01 91.96
SCNpilot_cont_1000_bf_scaffold_3096
Class: Alphaproteobacteria (57.14%)
7 6658 bp 64.45 51.10 91.96
SCNpilot_cont_1000_bf_scaffold_7750
Class: Alphaproteobacteria (55.56%)
9 7684 bp 63.11 47.44 91.98
SCNpilot_cont_1000_bf_scaffold_14499
Genus: Acidiphilium (66.67%)
3 2622 bp 64.45 47.77 91.99
SCNpilot_cont_1000_bf_scaffold_25526
Species: Caulobacter sp. AP07 (50%)
2 1746 bp 63.00 47.25 92.10
SCNpilot_cont_1000_bf_scaffold_855
Order: Rhizobiales (58.82%)
17 18881 bp 58.91 42.41 92.23
SCNpilot_cont_1000_bf_scaffold_28466
Species: alpha proteobacterium BAL199 (50%)
2 1609 bp 64.45 48.17 92.29
SCNpilot_cont_1000_bf_scaffold_25599
Genus: Bradyrhizobium (50%)
4 1742 bp 57.75 27.70 92.31
SCNpilot_cont_1000_bf_scaffold_15916
Class: Alphaproteobacteria (50%)
4 3392 bp 61.79 51.67 92.33
SCNpilot_cont_1000_bf_scaffold_27090 3 1669 bp 58.18 34.75 92.39
SCNpilot_cont_1000_bf_scaffold_6525
Order: Rhodospirillales (50%)
4 4365 bp 64.93 50.00 92.44
SCNpilot_cont_1000_bf_scaffold_50992
Order: Rhizobiales (50%)
4 1731 bp 62.80 31.34 92.55
SCNpilot_cont_1000_bf_scaffold_8216
Class: Gammaproteobacteria (60%)
5 3778 bp 61.88 52.47 92.59
SCNpilot_cont_1000_bf_scaffold_43973
Species: Candidatus Phaeomarinobacter ectocarpi (100%)
1 1153 bp 62.97 27.32 92.63
SCNpilot_cont_1000_bf_scaffold_11694
Class: Alphaproteobacteria (100%)
5 3020 bp 64.11 49.67 92.68
Displaying items 151-200 of 413 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.