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SCNpilot_cont_1000_bf_scaffold_12

Search features with annotation key words

Displaying items 1-30 of 778 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_12_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..872
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDE3_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99383.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_bf_scaffold_12_2
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

920..5785
DNA (4866bp) protein (1622aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KTS0_SOLCM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AFD06645.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
SCNpilot_cont_1000_bf_scaffold_12_3
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5868..10367
DNA (4500bp) protein (1500aa)
YD repeat protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKL6_CHIPD rbh
hypothetical protein rbh
YD repeat protein {ECO:0000313|EMBL:ACU62082.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_bf_scaffold_12_4
unknown

Not on your lists

10373..10636
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_12_5
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10660..11025)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI0003683AE7
Uncharacterized protein {ECO:0000313|EMBL:ETZ22813.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
transposase, IS116/IS110/IS902 family
SCNpilot_cont_1000_bf_scaffold_12_6
unknown

Not on your lists

11086..11286
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_12_7
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

11514..14894
DNA (3381bp) protein (1127aa)
Glycosyl hydrolase 38 domain protein id=4136656 bin=GWF2_Bacteroidetes_49_14 species=Chitinophaga pinensis genus=Chitinophaga taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab) rbh
Glycosyl hydrolases family 38 C-terminal domain protein rbh
Tax=RBG_13_Planctomycetes_62_9_curated
SCNpilot_cont_1000_bf_scaffold_12_8
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15153..16283
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000372334A rbh
glycoside hydrolase rbh
Glycoside hydrolase, family 20, catalytic core {ECO:0000313|EMBL:ACU61406.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_bf_scaffold_12_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16481..17086
DNA (606bp) protein (202aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDC7_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:KIC95791.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ECF subfamily RNA polymerase sigma-24 subunit
SCNpilot_cont_1000_bf_scaffold_12_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17090..17848
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDC6_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99366.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_bf_scaffold_12_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18308..21100)
DNA (2793bp) protein (931aa)
Tetratricopeptide TPR_1 repeat-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDC5_NIAKG rbh
hypothetical protein rbh
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:AEV99365.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_bf_scaffold_12_12
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21159..22094)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDC4_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC95795.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_12_13
unknown

Not on your lists

22332..22487
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_12_14
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22911..26618
DNA (3708bp) protein (1236aa)
Putative phytochrome sensor protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VRP5_DYAFD rbh
putative phytochrome sensor protein rbh
Putative phytochrome sensor protein {ECO:0000313|EMBL:ACT92748.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_1000_bf_scaffold_12_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26615..27370
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036272EE
Uncharacterized protein {ECO:0000313|EMBL:KIC89159.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
lytT; response regulator; K02477 two-component system, LytT family, response regulator
SCNpilot_cont_1000_bf_scaffold_12_16
unknown

Not on your lists

comp(27209..27529)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_12_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27590..28807
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMZ2_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV96654.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_bf_scaffold_12_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28833..31298
DNA (2466bp) protein (822aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCD5_NIAKG rbh
hypothetical protein; K02004 putative ABC transport system permease protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEW01442.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_bf_scaffold_12_19
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31503..32141)
DNA (639bp) protein (213aa)
Haloacid dehalogenase domain protein hydrolase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUR2_CHIPD
haloacid dehalogenase; K07025 putative hydrolase of the HAD superfamily
Haloacid dehalogenase domain protein hydrolase {ECO:0000313|EMBL:ACU61060.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_bf_scaffold_12_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32161..33627)
DNA (1467bp) protein (489aa)
Transcriptional regulator, GntR family with aminotransferase domain n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI46_NIAKG rbh
DeoR family transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase rbh
Transcriptional regulator, GntR family with aminotransferase domain {ECO:0000313|EMBL:AEV99649.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_bf_scaffold_12_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33707..34150
DNA (444bp) protein (148aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI47_NIAKG
alkylhydroperoxidase
SCNpilot_cont_1000_bf_scaffold_12_22
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

34172..34984
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI48_NIAKG rbh
Uncharacterized protein {ECO:0000313|EMBL:GAE65275.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_12_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35004..35807)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB63_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02446.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_bf_scaffold_12_24
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35875..36111)
DNA (237bp) protein (79aa)
UPI0003D687AB related cluster n=1 Tax=unknown RepID=UPI0003D687AB
Uncharacterised protein {ECO:0000313|EMBL:CKH94316.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
TolA protein
SCNpilot_cont_1000_bf_scaffold_12_25
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(36180..39404)
DNA (3225bp) protein (1075aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PGF1_CHIPD rbh
Uncharacterized protein {ECO:0000313|EMBL:ACU59883.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_12_26
RBG_16_Ignavibacteria_36_9_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(39490..40578)
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000363A7BF rbh
hypothetical protein rbh
Tax=RBG_16_Ignavibacteria_36_9_curated
SCNpilot_cont_1000_bf_scaffold_12_27
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

40610..41710
DNA (1101bp) protein (367aa)
glycerate kinase (EC:2.7.1.31); K00865 glycerate kinase [EC:2.7.1.31]
Glycerate kinase {ECO:0000313|EMBL:ADB37971.1}; EC=2.7.1.31 {ECO:0000313|EMBL:ADB37971.1};; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
Glycerate kinase n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QBU2_SPILD
SCNpilot_cont_1000_bf_scaffold_12_28
Pseudogulbenkiania sp. NH8B, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41793..42302
DNA (510bp) protein (170aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2IYY0_PSEUL
3-demethylubiquinone-9 3-methyltransferase
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:BAK75733.1}; TaxID=748280 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania sp. (strain NH8B).;"
SCNpilot_cont_1000_bf_scaffold_12_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

42311..43672
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THY3_NIAKG rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEV98578.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_bf_scaffold_12_30
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

43699..44088
DNA (390bp) protein (130aa)
Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11V69_CYTH3
PF08818 domain protein {ECO:0000313|EMBL:GAL85630.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
hypothetical protein
Displaying items 1-30 of 778 in total

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