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SCNpilot_cont_1000_bf_scaffold_245

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_245_1
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..791)
DNA (789bp) protein (263aa)
alcohol dehydrogenase zinc-binding domain protein; K00344 NADPH2:quinone reductase [EC:1.6.5.5] rbh
Alcohol dehydrogenase n=1 Tax=Pandoraea sp. RB-44 RepID=V5UMR1_9BURK rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:AHB78236.1}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
SCNpilot_cont_1000_bf_scaffold_245_2
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

876..1790
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034B02BE rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:AHB05699.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_1000_bf_scaffold_245_trna_1
unknown

Not on your lists

comp(1955..2042)
DNA (88bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_245_3
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2145..3449)
DNA (1305bp) protein (435aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] rbh
seryl-tRNA synthetase n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034C5E51 rbh
SCNpilot_cont_1000_bf_scaffold_245_4
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3614..5080)
DNA (1467bp) protein (489aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000348C384 rbh
Recombination factor protein RarA {ECO:0000313|EMBL:EON14100.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
ATPase rbh
SCNpilot_cont_1000_bf_scaffold_245_5
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5163..5813)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034A0CF5 rbh
Outer-membrane lipoprotein carrier protein {ECO:0000256|HAMAP-Rule:MF_00240, ECO:0000256|SAAS:SAAS00028972}; Flags: Precursor;; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
lolA; outer-membrane lipoprotein carrier protein; K03634 outer membrane lipoprotein carrier protein
SCNpilot_cont_1000_bf_scaffold_245_6
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5819..8065)
DNA (2247bp) protein (749aa)
cell division protein FtsK n=1 Tax=Pandoraea sp. B-6 RepID=UPI000347CE30 rbh
Cell division protein FtsK {ECO:0000313|EMBL:AIU28762.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family rbh
SCNpilot_cont_1000_bf_scaffold_245_7
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8229..9425
DNA (1197bp) protein (399aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
trxB; NADPH-dependent thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] rbh
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003700637 rbh
SCNpilot_cont_1000_bf_scaffold_245_8
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9524..10201
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034DA833 rbh
DNA mismatch repair protein MutS {ECO:0000313|EMBL:KHQ95407.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
Smr protein/MutS2
SCNpilot_cont_1000_bf_scaffold_245_9
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10423..10761)
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003482EE4
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:AJC21543.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
nitrogen regulatory protein P-II; K04751 nitrogen regulatory protein P-II 1
SCNpilot_cont_1000_bf_scaffold_245_10
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10849..12951)
DNA (2103bp) protein (701aa)
NAD synthetase {ECO:0000313|EMBL:KHQ95983.1}; EC=6.3.5.1 {ECO:0000313|EMBL:KHQ95983.1};; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
nadE; NAD synthetase (EC:6.3.1.5); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] rbh
NAD synthetase n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034B5E80 rbh
SCNpilot_cont_1000_bf_scaffold_245_11
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13107..14243)
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000365C2EE rbh
Uncharacterized protein {ECO:0000313|EMBL:EON14108.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_245_12
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14413..15282)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0G009_9BURK rbh
hypothetical protein
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_cont_1000_bf_scaffold_245_13
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15270..16331)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FKD9_9BURK rbh
hypothetical protein
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_cont_1000_bf_scaffold_245_14
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16643..17170)
DNA (528bp) protein (176aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
inorganic pyrophosphatase (EC:3.6.1.1); K01507 inorganic pyrophosphatase [EC:3.6.1.1] rbh
inorganic pyrophosphatase n=1 Tax=Pandoraea sp. B-6 RepID=UPI000346D62B rbh
SCNpilot_cont_1000_bf_scaffold_245_15
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17273..18457)
DNA (1185bp) protein (395aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034BC100 rbh
FMN-dependent dehydrogenase {ECO:0000313|EMBL:EON14115.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
lldD; FMN-dependent dehydrogenase rbh
SCNpilot_cont_1000_bf_scaffold_245_16
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18609..19484
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003697815 rbh
IclR family transcriptional regulator {ECO:0000313|EMBL:AIU28753.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
Transcriptional regulator, IclR family rbh
SCNpilot_cont_1000_bf_scaffold_245_17
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19523..20434)
DNA (912bp) protein (304aa)
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] rbh
ABC transporter permease n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003460095 rbh
ABC transporter permease {ECO:0000313|EMBL:AJF00546.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
SCNpilot_cont_1000_bf_scaffold_245_18
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20482..22188)
DNA (1707bp) protein (569aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00036F993E rbh
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:EON14118.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
binding-protein-dependent transport systems inner membrane component rbh
SCNpilot_cont_1000_bf_scaffold_245_19
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22288..23433)
DNA (1146bp) protein (382aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000347C5F8 rbh
POPT family ABC transporter permease; K02052 putative spermidine/putrescine transport system ATP-binding protein rbh
SCNpilot_cont_1000_bf_scaffold_245_20
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23479..24627)
DNA (1149bp) protein (383aa)
dehydrogenase n=1 Tax=Pandoraea sp. B-6 RepID=UPI000346A439 rbh
Extracellular substrate-binding protein {ECO:0000313|EMBL:EON14120.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_245_21
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24737..26173)
DNA (1437bp) protein (479aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034507C7 rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:EON14121.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
D-2-hydroxyglutarate dehydrogenase rbh
SCNpilot_cont_1000_bf_scaffold_245_22
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26434..27873
DNA (1440bp) protein (480aa)
aldehyde dehydrogenase n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034CC00E rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:AJF00551.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
aldehyde Dehydrogenase rbh
SCNpilot_cont_1000_bf_scaffold_245_23
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27980..28738
DNA (759bp) protein (253aa)
3-ketoacyl-ACP reductase {ECO:0000313|EMBL:AJF00552.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AJF00552.1};; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.-); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
3-ketoacyl-ACP reductase n=1 Tax=Pandoraea sp. B-6 RepID=UPI000345938F rbh
SCNpilot_cont_1000_bf_scaffold_245_24
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28832..30148
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00037FB81F rbh
MFS transporter {ECO:0000313|EMBL:AHB06929.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
transporter Major facilitator superfamily MFS rbh
SCNpilot_cont_1000_bf_scaffold_245_25
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30317..31825
DNA (1509bp) protein (503aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034CAA38 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHQ95393.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
membrane transporter
SCNpilot_cont_1000_bf_scaffold_245_26
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31859..33031)
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000347D176 rbh
Heme biosynthesis protein HemY {ECO:0000313|EMBL:KHQ95391.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
hypothetical protein; K02498 HemY protein rbh
SCNpilot_cont_1000_bf_scaffold_245_27
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33042..34205)
DNA (1164bp) protein (388aa)
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; K13543 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] rbh
hypothetical protein, partial n=1 Tax=Pandoraea sp. B-6 RepID=UPI00035D832E rbh
Uncharacterized protein {ECO:0000313|EMBL:AJF00557.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
SCNpilot_cont_1000_bf_scaffold_245_28
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34202..35119)
DNA (918bp) protein (306aa)
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase (EC:2.1.1.107 4.2.1.75); K13543 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
Bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X3S2_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:AJF00558.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
SCNpilot_cont_1000_bf_scaffold_245_29
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35197..36165)
DNA (969bp) protein (323aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260, ECO:0000313|EMBL:AJF00559.1}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260, ECO:0000256|SAAS:SAAS00018413};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
hemC; hydroxymethylbilane synthase (porphobilinogen deaminase) (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61] rbh
Porphobilinogen deaminase n=2 Tax=Pandoraea RepID=V5UHE8_9BURK rbh
Displaying items 1-30 of 66 in total

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