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SCNpilot_cont_1000_p_scaffold_2697

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2697_1
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..287)
DNA (285bp) protein (95aa)
Twin-arginine translocation pathway signal n=3 Tax=Oligotropha carboxidovorans RepID=B6JJY6_OLICO
twin-arginine translocation pathway signal
Multicopper oxidase, TAT pathway translocated {ECO:0000313|EMBL:AEI05234.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_1000_p_scaffold_2697_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(299..1762)
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NN64_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS31757.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
outer membrane efflux protein
SCNpilot_cont_1000_p_scaffold_2697_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1772..2068)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NRP1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS31756.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2697_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2146..2472)
DNA (327bp) protein (109aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BQX1_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI08215.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_1000_p_scaffold_2697_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3783..4424
DNA (642bp) protein (214aa)
Cytochrome c family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSZ3_9GAMM
Cytochrome c family protein {ECO:0000313|EMBL:EIL90334.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ketosteroid isomerase-like enzyme
SCNpilot_cont_1000_p_scaffold_2697_6
unknown

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comp(4408..4563)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2697_7
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4631..5005
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QGW4_9BRAD
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_cont_1000_p_scaffold_2697_8
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5146..7005
DNA (1860bp) protein (620aa)
PREDICTED: L-ascorbate oxidase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C10906
CopA family copper resistance protein
Copper-resistance protein, CopA family {ECO:0000313|EMBL:ABZ71479.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_2697_9
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7002..8021
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2HQ15_9CAUL
copper resistance B; K07233 copper resistance protein B
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_1000_p_scaffold_2697_10
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8127..9116
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4N6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI52916.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2697_11
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9245..9586
DNA (342bp) protein (114aa)
NADH-quinone oxidoreductase subunit {ECO:0000256|RuleBase:RU003639}; EC=1.6.5.11 {ECO:0000256|RuleBase:RU003639};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
NADH-ubiquinone/plastoquinone oxidoreductase chain 3; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LHK0_9RHIZ
SCNpilot_cont_1000_p_scaffold_2697_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9577..10476
DNA (900bp) protein (300aa)
NADH dehydrogenase (quinone); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3]
NADH dehydrogenase (Quinone) n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZBA7_METPB
NADH dehydrogenase {ECO:0000313|EMBL:KIZ44756.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_1000_p_scaffold_2697_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10473..11423
DNA (951bp) protein (317aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CJN3_9RHIZ
NADH-ubiquinone oxidoreductase {ECO:0000313|EMBL:KIZ44755.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
NADH-ubiquinone/plastoquinone oxidoreductase chain 6
SCNpilot_cont_1000_p_scaffold_2697_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11420..11731
DNA (312bp) protein (104aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
NADH-ubiquinone oxidoreductase chain 4L; K05576 NAD(P)H-quinone oxidoreductase subunit 4L [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZBA9_METPB
SCNpilot_cont_1000_p_scaffold_2697_15
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11728..13425
DNA (1698bp) protein (566aa)
proton-translocating NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3]
Proton-translocating NADH-quinone oxidoreductase, chain L {ECO:0000313|EMBL:ACB80706.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ACB80706.1};; Flags: Precursor;; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
Proton-translocating NADH-quinone oxidoreductase, chain L n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZBB0_METPB
Displaying 15 items

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