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SCNpilot_cont_1000_p_scaffold_2901

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2901_1
Pluralibacter gergoviae, Pluralibacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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72..338
DNA (267bp) protein (89aa)
Transposase IS3/IS911 n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UPB6_YERRU
Transposase {ECO:0000313|EMBL:AIR00231.1}; TaxID=61647 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pluralibacter.;" source="Pluralibacter gergoviae (Enterobacter gergoviae).;"
putative tansposase
SCNpilot_cont_1000_p_scaffold_2901_2
Marinobacter sp. EVN1, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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359..1159
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Marinobacter sp. EVN1 RepID=U7NYG6_9ALTE rbh
Uncharacterized protein {ECO:0000313|EMBL:ERS87395.1}; TaxID=1397532 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. EVN1.;"
ISxcd1 transposase rbh
SCNpilot_cont_1000_p_scaffold_2901_3
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1415..3313)
DNA (1899bp) protein (633aa)
RNA polymerase sigma factor RpoD n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4XAL8_PSEDE
RNA polymerase sigma factor RpoD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
SCNpilot_cont_1000_p_scaffold_2901_4
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3519..5324)
DNA (1806bp) protein (602aa)
DNA primase n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FC67_9GAMM
DNA primase {ECO:0000313|EMBL:AKH21512.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
DNA primase (bacterial type)
SCNpilot_cont_1000_p_scaffold_2901_5
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5351..5803)
DNA (453bp) protein (151aa)
Uncharacterized conserved protein n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2S8V5_HAHCH
hypothetical protein; K09117 hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:ABC32919.1}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahella chejuensis (strain KCTC 2396).;"
SCNpilot_cont_1000_p_scaffold_2901_6
R_Gammaproteobacteria_35_23, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5862..6122)
DNA (261bp) protein (87aa)
30S ribosomal protein S21 n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=RS21_HAHCH
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_35_23_curated
SCNpilot_cont_1000_p_scaffold_2901_7
Pantoea sp. YR343, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6502..7530
DNA (1029bp) protein (343aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1144341 species="Bacteria; Proteobacteria; Gammapr
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Pantoea sp. YR343 RepID=J3C9C5_9ENTR
ygjD; t(6)A tRNA modification protein
SCNpilot_cont_1000_p_scaffold_2901_8
unknown

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comp(7583..8599)
DNA (1017bp) protein (339aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2901_9
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8717..9325)
DNA (609bp) protein (203aa)
hypothetical protein; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15]
Glycerol-3-phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000255|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000255|HAMAP-Rule:MF_01043}; Short=GPAT {ECO:0000255|HAMAP-Rule:MF_01043};; EC=2.3.1.n3 {ECO:0000255|HAMAP-Rule:MF_01043};; Lysophosphatidic acid synthase {ECO:0000255|HAMAP-Rule:MF_01043}; Short=LPA synthase {ECO:0000255|HAMAP-Rule:MF_01043};; TaxID=243233 spec
Glycerol-3-phosphate acyltransferase n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=PLSY_METCA
SCNpilot_cont_1000_p_scaffold_2901_10
R_Gammaproteobacteria_45_12, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9345..10031)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CGN5_9BACT
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_45_12_curated
SCNpilot_cont_1000_p_scaffold_2901_11
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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10354..10704
DNA (351bp) protein (117aa)
Dihydroneopterin aldolase {ECO:0000313|EMBL:EDN66113.1}; EC=4.1.2.25 {ECO:0000313|EMBL:EDN66113.1};; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase n=1 Tax=Beggiatoa sp. PS RepID=A7C521_9GAMM
SCNpilot_cont_1000_p_scaffold_2901_12
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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10701..11873
DNA (1173bp) protein (391aa)
Putative uncharacterized protein n=1 Tax=Coxiella burnetii (strain CbuG_Q212) RepID=B6J318_COXB2 rbh
hypothetical protein rbh
Tax=RBG_16_Gammaproteobacteria_57_12_curated
SCNpilot_cont_1000_p_scaffold_2901_13
unknown

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12098..12451
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2901_14
unknown

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12911..13711
DNA (801bp) protein (267aa)

This feature has no annotations

Displaying 14 items

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