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SCNpilot_cont_1000_p_scaffold_1358

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1358_1
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1097
DNA (1095bp) protein (365aa)
Int n=4 Tax=Proteobacteria RepID=H9U3F2_PSEAI rbh
int; integrase rbh
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
SCNpilot_cont_1000_p_scaffold_1358_2
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1135..2103)
DNA (969bp) protein (323aa)
Uncharacterized protein n=5 Tax=Proteobacteria RepID=A4G6Q9_HERAR rbh
hypothetical protein; K07223 putative iron-dependent peroxidase rbh
Uncharacterized protein {ECO:0000313|EMBL:CAL62196.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
SCNpilot_cont_1000_p_scaffold_1358_3
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2222..3037)
DNA (816bp) protein (272aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U9C3F6_PSEAI rbh
hypothetical protein rbh
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
SCNpilot_cont_1000_p_scaffold_1358_4
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3311..4201)
DNA (891bp) protein (297aa)
Uncharacterized protein n=5 Tax=Pseudomonas aeruginosa RepID=U8LCU6_PSEAI rbh
Pseudomonas putida strain UASWS0946 Contig178, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49125.1}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
LysR family transcriptional regulator rbh
SCNpilot_cont_1000_p_scaffold_1358_5
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4429..4653
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Pseudomonas mosselii SJ10 RepID=V6V0T7_9PSED
Uncharacterized protein {ECO:0000313|EMBL:KGE68070.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
SCNpilot_cont_1000_p_scaffold_1358_6
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4685..5899)
DNA (1215bp) protein (405aa)
fdhA; glutathione-independent formaldehyde dehydrogenase (EC:1.2.1.46); K00148 glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] rbh
Formaldehyde dismutase n=1 Tax=Pseudomonas aeruginosa MH27 RepID=V6ADT9_PSEAI rbh
Formaldehyde dehydrogenase, glutathione-independent {ECO:0000313|EMBL:ERV82526.1}; TaxID=1402545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BL04.;"
SCNpilot_cont_1000_p_scaffold_1358_7
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6217..6336
DNA (120bp) protein (40aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8MTP3_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:AIO47963.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
SCNpilot_cont_1000_p_scaffold_1358_8
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6366..7181)
DNA (816bp) protein (272aa)
Uncharacterized protein n=3 Tax=Pseudomonas aeruginosa RepID=U8MRC7_PSEAI rbh
LysR substrate binding domain protein {ECO:0000313|EMBL:AIO47752.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
LysR family transcriptional regulator rbh
SCNpilot_cont_1000_p_scaffold_1358_9
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7792..8223
DNA (432bp) protein (144aa)
UPI0000338E7C related cluster n=1 Tax=unknown RepID=UPI0000338E7C
Uncharacterized protein {ECO:0000313|EMBL:KGE68066.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1358_10
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8554..10530
DNA (1977bp) protein (659aa)
UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) n=5 Tax=Proteobacteria RepID=A4G6Q2_HERAR rbh
UvrABC system protein B {ECO:0000256|SAAS:SAAS00009141}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
Excinuclease ABC subunit B rbh
SCNpilot_cont_1000_p_scaffold_1358_11
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10681..11586)
DNA (906bp) protein (302aa)
Transcriptional regulator n=4 Tax=Proteobacteria RepID=M5IZ25_9BURK rbh
transcriptional regulator rbh
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:CAL62188.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
SCNpilot_cont_1000_p_scaffold_1358_12
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11741..12148
DNA (408bp) protein (136aa)
Uncharacterized protein n=5 Tax=Proteobacteria RepID=A4G6Q0_HERAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI33656.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
SCNpilot_cont_1000_p_scaffold_1358_13
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12150..12758
DNA (609bp) protein (203aa)
Uncharacterized protein n=4 Tax=Proteobacteria RepID=A4G6P9_HERAR rbh
N-acetyltransferase rbh
GNAT family acetyltransferase {ECO:0000313|EMBL:ERI33657.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
SCNpilot_cont_1000_p_scaffold_1358_14
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12755..13645
DNA (891bp) protein (297aa)
Nitrilase n=4 Tax=Proteobacteria RepID=M5IU11_9BURK rbh
nitrilase rbh
Nitrilase {ECO:0000313|EMBL:ERI33658.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
SCNpilot_cont_1000_p_scaffold_1358_15
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13928..14203
DNA (276bp) protein (92aa)
Repressor FrmR n=10 Tax=Proteobacteria RepID=A4G6P7_HERAR
regulator
Transcriptional repressor frmR {ECO:0000313|EMBL:AIO47588.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
SCNpilot_cont_1000_p_scaffold_1358_16
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14263..15372
DNA (1110bp) protein (370aa)
glutathione-dependent formaldehyde dehydrogenase (EC:1.1.1.284); K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] rbh
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
Alcohol dehydrogenase class-3 (Alcohol dehydrogenase class-III) (S-(Hydroxymethyl)glutathione dehydrogenase) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) n=8 Tax=Proteobacteria RepID=A4G6P6_HERAR rbh
SCNpilot_cont_1000_p_scaffold_1358_17
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15416..15814
DNA (399bp) protein (133aa)
Uncharacterized protein n=4 Tax=Proteobacteria RepID=A4G6P5_HERAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL62182.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
SCNpilot_cont_1000_p_scaffold_1358_18
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15997..17331
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HP22_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:EQL42098.1}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA03.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_1358_19
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17390..18220
DNA (831bp) protein (277aa)
S-formylglutathione hydrolase (EC:3.1.2.12) rbh
S-formylglutathione hydrolase n=4 Tax=Proteobacteria RepID=I2IMA4_9BURK rbh
S-formylglutathione hydrolase {ECO:0000313|EMBL:ERI33663.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
SCNpilot_cont_1000_p_scaffold_1358_20
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18239..19546
DNA (1308bp) protein (436aa)
NADH dehydrogenase transmembrane protein (EC:1.6.99.3); K03885 NADH dehydrogenase [EC:1.6.99.3] rbh
NADH dehydrogenase n=2 Tax=Proteobacteria RepID=U1XWS9_9BURK rbh
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
SCNpilot_cont_1000_p_scaffold_1358_21
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19598..20911
DNA (1314bp) protein (438aa)
Recombination factor protein RarA n=3 Tax=Proteobacteria RepID=M5IU12_9BURK rbh
ATPase AAA {ECO:0000313|EMBL:ERI33665.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
ATPase AAA rbh
SCNpilot_cont_1000_p_scaffold_1358_22
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20972..22837
DNA (1866bp) protein (622aa)
Na(+)/H(+) antiporter NhaA n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HP78_PSEAI rbh
sodium:proton antiporter rbh
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
SCNpilot_cont_1000_p_scaffold_1358_23
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22863..25514
DNA (2652bp) protein (884aa)
Excinuclease ABC subunit A n=2 Tax=Pseudomonas aeruginosa RepID=U9HP28_PSEAI rbh
Excinuclease ABC subunit A paralog of unknown function rbh
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
SCNpilot_cont_1000_p_scaffold_1358_24
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25595..27433)
DNA (1839bp) protein (613aa)
Integrating conjugative element relaxase, PFGI-1 class n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HZ31_PSEAI rbh
Pyruvate/2-oxoglutarate dehydrogenase complex,dihydrolipoamide acyltransferase (E2) component,and related enzymes rbh
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
SCNpilot_cont_1000_p_scaffold_1358_25
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27751..28377
DNA (627bp) protein (209aa)
Integrase n=3 Tax=Proteobacteria RepID=U1XWT3_9BURK rbh
hypothetical protein rbh
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
SCNpilot_cont_1000_p_scaffold_1358_26
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28390..29022
DNA (633bp) protein (211aa)
Uncharacterized protein n=3 Tax=Proteobacteria RepID=M5IZZ3_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EQL42007.1}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA03.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_1358_27
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29107..29472
DNA (366bp) protein (122aa)
Uncharacterized protein n=4 Tax=Proteobacteria RepID=M5IU14_9BURK
hypothetical protein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
SCNpilot_cont_1000_p_scaffold_1358_28
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29484..31004)
DNA (1521bp) protein (507aa)
Membrane protein n=2 Tax=Proteobacteria RepID=U1ZM19_9BURK rbh
Membrane protein {ECO:0000313|EMBL:EQL42009.1}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA03.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_1358_29
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31020..31376)
DNA (357bp) protein (119aa)
Uncharacterized protein n=3 Tax=Proteobacteria RepID=M5IZZ6_9BURK
hypothetical protein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
SCNpilot_cont_1000_p_scaffold_1358_30
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31373..32671)
DNA (1299bp) protein (433aa)
Integrating conjugative element protein n=2 Tax=Pseudomonas aeruginosa RepID=U8LBQ1_PSEAI
hypothetical protein
Conjugal transfer protein {ECO:0000313|EMBL:KGE52280.1}; TaxID=325777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. vasculorum.;"
Displaying items 1-30 of 33 in total

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