ggKbase home page

SCNpilot_cont_1000_p_scaffold_1800

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1800_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..389
DNA (387bp) protein (129aa)
Cytochrome c peroxidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEY6_9GAMM
cytochrome c peroxidase
Cytochrome c peroxidase {ECO:0000313|EMBL:AGG89430.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_1000_p_scaffold_1800_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

499..1293
DNA (795bp) protein (265aa)
putative exodeoxyribonuclease III protein (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
Putative EXODEOXYRIBONUCLEASE III PROTEIN {ECO:0000313|EMBL:CAQ46112.1}; EC=3.1.11.2 {ECO:0000313|EMBL:CAQ46112.1};; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
Putative EXODEOXYRIBONUCLEASE III PROTEIN n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FT02_STRMK rbh
SCNpilot_cont_1000_p_scaffold_1800_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1317..1715)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WJH7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99618.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
glyoxalase
SCNpilot_cont_1000_p_scaffold_1800_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1831..3870)
DNA (2040bp) protein (680aa)
Signal transduction histidine kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWE5_9GAMM rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:EIL91536.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Hybrid sensor histidine kinase
SCNpilot_cont_1000_p_scaffold_1800_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3867..5360)
DNA (1494bp) protein (498aa)
Circadian clock protein KaiC n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWE6_9GAMM rbh
Circadian clock protein KaiC {ECO:0000313|EMBL:EIL91537.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
kaiC; circadian clock protein KaiC; K08482 circadian clock protein KaiC rbh
SCNpilot_cont_1000_p_scaffold_1800_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5776..5913)
DNA (138bp) protein (46aa)
TonB-dependent receptor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWF0_9GAMM
TonB-dependent receptor {ECO:0000313|EMBL:EIL91541.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_1000_p_scaffold_1800_7
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5913..6149)
DNA (237bp) protein (79aa)
TonB-dependent receptor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWF0_9GAMM
TonB-dependent receptor
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_cont_1000_p_scaffold_1800_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6317..6592)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY29_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_1000_p_scaffold_1800_9
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6706..6921)
DNA (216bp) protein (72aa)
Transcriptional regulator n=1 Tax=Streptomyces albulus CCRC 11814 RepID=S0HK52_STRA9
XRE family transcriptional regulator {ECO:0000313|EMBL:AIA01215.1}; TaxID=68570 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albulus.;"
XRE family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_1800_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6921..7427)
DNA (507bp) protein (169aa)
Transmembrane transport protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWE4_9GAMM
Transmembrane transport protein {ECO:0000313|EMBL:EIL91535.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transmembrane transport protein
SCNpilot_cont_1000_p_scaffold_1800_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7800..9362
DNA (1563bp) protein (521aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BB8E1 rbh
ankyrin
Ankyrin {ECO:0000313|EMBL:ADU38776.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_1800_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9467..10297)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W0I0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92971.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_cont_1000_p_scaffold_1800_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10543..10935)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTF9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90500.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
glutathione-dependent formaldehyde-activating Gfa
SCNpilot_cont_1000_p_scaffold_1800_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11075..12292
DNA (1218bp) protein (406aa)
Glucose sorbosone dehydrogenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTG7_9GAMM rbh
Glucose sorbosone dehydrogenase {ECO:0000313|EMBL:EIL90508.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
glucose sorbosone dehydrogenase
SCNpilot_cont_1000_p_scaffold_1800_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12302..12733)
DNA (432bp) protein (144aa)
Rifampin ADP-ribosyl transferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3F3_9GAMM
Rifampin ADP-ribosyl transferase {ECO:0000313|EMBL:EIL93994.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
rifampin ADP-ribosyl transferase
SCNpilot_cont_1000_p_scaffold_1800_16
unknown

Not on your lists

comp(13010..13957)
DNA (948bp) protein (316aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1800_17
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14086..14421)
DNA (336bp) protein (112aa)
acetyltransferase n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI00039FDDBB
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_1000_p_scaffold_1800_18
unknown

Not on your lists

comp(14615..14935)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1800_19
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15050..15361)
DNA (312bp) protein (104aa)
Transcriptional regulator, XRE family n=2 Tax=Nitrosococcus oceani RepID=Q3JED3_NITOC
XRE family transcriptional regulator; K07726 putative transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:KFI20767.1}; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C-27.;"
SCNpilot_cont_1000_p_scaffold_1800_20
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15612..16556)
DNA (945bp) protein (315aa)
UPI0003CFF24C related cluster n=1 Tax=unknown RepID=UPI0003CFF24C
Uncharacterized protein {ECO:0000313|EMBL:ESZ50743.1}; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1800_21
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17076..17867)
DNA (792bp) protein (264aa)
Site-specific DNA-methyltransferase (adenine-specific) {ECO:0000256|RuleBase:RU361257}; EC=2.1.1.72 {ECO:0000256|RuleBase:RU361257};; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
dam; N6 adenine-specific DNA methyltransferase, D12 class (EC:2.1.1.72)
UPI0003D01D9D related cluster n=1 Tax=unknown RepID=UPI0003D01D9D rbh
SCNpilot_cont_1000_p_scaffold_1800_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17934..18827)
DNA (894bp) protein (298aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
urocanate hydratase (EC:4.2.1.49)
Urocanate hydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPD1_9GAMM
Displaying 22 items

View Taxonomy