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SCNpilot_cont_1000_p_scaffold_7264

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_7264_1
Edwardsiella tarda, Edwardsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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103..978
DNA (876bp) protein (292aa)
Antirestriction protein n=7 Tax=Enterobacteriaceae RepID=Q0QCD2_KLEPN
antirestriction protein
Antirestriction protein {ECO:0000313|EMBL:ADQ43870.1}; TaxID=636 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella.;" source="Edwardsiella tarda.;"
SCNpilot_cont_1000_p_scaffold_7264_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1012..1290)
DNA (279bp) protein (93aa)
Histone family protein DNA-binding protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CPI3_SIDLE
DNA-binding protein {ECO:0000313|EMBL:KIO48698.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
histone family protein DNA-binding protein
SCNpilot_cont_1000_p_scaffold_7264_3
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1765..2373)
DNA (609bp) protein (203aa)
Methyltransferase type 12 n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EMS6_METSB rbh
type 12 methyltransferase rbh
Methyltransferase type 12 {ECO:0000313|EMBL:ACK52755.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_1000_p_scaffold_7264_4
unknown

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comp(2389..2496)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_7264_5
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2493..2774)
DNA (282bp) protein (94aa)
Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CWE7_9RHIZ
Putative transcriptional regulator containing the CopG/Arc/MetJ DNA-binding domain protein {ECO:0000313|EMBL:EDQ35509.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
addiction module antidote protein; K07746 hypothetical protein
SCNpilot_cont_1000_p_scaffold_7264_6
unknown

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comp(2917..3126)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_7264_7

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comp(3180..3629)
DNA (450bp) protein (150aa)
TrbN n=1 Tax=Sphingomonas sp. A1 RepID=Q4AC42_9SPHN
transglycosylase SLT domain-containing protein 6
TrbN {ECO:0000313|EMBL:AEV57132.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_1000_p_scaffold_7264_8

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comp(3642..4967)
DNA (1326bp) protein (442aa)
TrbL mating pair formation protein n=1 Tax=uncultured bacterium pAKD4 RepID=D4N5I0_9BACT
TrbL mating pair formation protein {ECO:0000313|EMBL:ADD63284.1}; TaxID=743682 species="Bacteria; environmental samples.;" source="uncultured bacterium pAKD4.;"
TrbL/VirB6 plasmid conjugal transfer protein; K03201 type IV secretion system protein VirB6
SCNpilot_cont_1000_p_scaffold_7264_9
unknown

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comp(4971..5177)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_7264_10
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5187..5963)
DNA (777bp) protein (259aa)
conjugal transfer protein TrbJ n=1 Tax=Paracoccus sp. N5 RepID=UPI000361DF7F
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:AHB06153.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
conjugal transfer protein TrbJ
SCNpilot_cont_1000_p_scaffold_7264_11
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5956..6114)
DNA (159bp) protein (53aa)
TrbI protein n=4 Tax=root RepID=Q0E6D8_PSEAI
Type IV secretory pathway VirB10 component {ECO:0000313|EMBL:KFL46893.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
trbI; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
Displaying 11 items

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