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SCNpilot_cont_1000_p_scaffold_7789

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_7789_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..674)
DNA (672bp) protein (224aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4]
Aspartokinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKT4_9PROT
SCNpilot_cont_1000_p_scaffold_7789_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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953..1237
DNA (285bp) protein (95aa)
Putative transcriptional regulator, XRE family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7N4_NITMU
XRE family transcriptional regulator {ECO:0000313|EMBL:KIO49022.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
XRE family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_7789_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1323..2183)
DNA (861bp) protein (287aa)
Radical SAM domain protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKW0_9PROT rbh
Radical SAM domain protein {ECO:0000313|EMBL:CCU63527.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_7789_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2200..2676
DNA (477bp) protein (159aa)
putative 6-pyruvoyl tetrahydropterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12]
Queuosine biosynthesis QueD, PTPS-I n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLI4_9PROT
Queuosine biosynthesis QueD, PTPS-I {ECO:0000313|EMBL:CCU63528.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_p_scaffold_7789_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2857..3333
DNA (477bp) protein (159aa)
Thiol peroxidase, Bcp-type {ECO:0000313|EMBL:CCU63529.1}; EC=1.11.1.15 {ECO:0000313|EMBL:CCU63529.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Thiol peroxidase, Bcp-type n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKT7_9PROT
SCNpilot_cont_1000_p_scaffold_7789_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3330..4772
DNA (1443bp) protein (481aa)
Predicted ATPase related to phosphate starvation-inducible protein PhoH n=1 Tax=Nitrosospira sp. APG3 RepID=M5DW28_9PROT rbh
Predicted ATPase related to phosphate starvation-inducible protein PhoH {ECO:0000313|EMBL:CCU63530.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
PhoH-like protein; K07175 PhoH-like ATPase rbh
SCNpilot_cont_1000_p_scaffold_7789_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4891..5745)
DNA (855bp) protein (285aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12]
Replicative DNA helicase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJD3_9PROT
Replicative DNA helicase {ECO:0000313|EMBL:CCU63531.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_p_scaffold_7789_8
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5742..6233)
DNA (492bp) protein (164aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12]
Primary replicative DNA helicase {ECO:0000313|EMBL:ABB75242.1}; EC=3.6.1.- {ECO:0000313|EMBL:ABB75242.1};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Primary replicative DNA helicase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7M9_NITMU
SCNpilot_cont_1000_p_scaffold_7789_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6408..6857)
DNA (450bp) protein (150aa)
50S ribosomal protein L9 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKW2_9PROT
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
50S ribosomal protein L9; K02939 large subunit ribosomal protein L9
SCNpilot_cont_1000_p_scaffold_7789_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6866..7150)
DNA (285bp) protein (95aa)
30S ribosomal protein S18 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLI7_9PROT
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
SCNpilot_cont_1000_p_scaffold_7789_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7167..7412)
DNA (246bp) protein (82aa)
Primosomal replication protein n n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKU0_9PROT
primosomal replication protein N; K02686 primosomal replication protein N
Primosomal replication protein n {ECO:0000256|HAMAP-Rule:MF_00720, ECO:0000256|SAAS:SAAS00194886}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_p_scaffold_7789_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7473..7850)
DNA (378bp) protein (126aa)
30S ribosomal protein S6 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DW34_9PROT
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
SCNpilot_cont_1000_p_scaffold_7789_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7945..8508)
DNA (564bp) protein (188aa)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB {ECO:0000256|HAMAP-Rule:MF_01887}; EC=2.1.1.185 {ECO:0000256|HAMAP-Rule:MF_01887};; 23S rRNA (guanosine2251 2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; 23S rRNA Gm2251 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
TrmH family RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKW5_9PROT
SCNpilot_cont_1000_p_scaffold_7789_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8511..10685)
DNA (2175bp) protein (725aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
VacB/RNase II family 3'-5' exoribonuclease (EC:3.1.13.1); K12573 ribonuclease R [EC:3.1.-.-] rbh
Ribonuclease R n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLJ3_9PROT rbh
SCNpilot_cont_1000_p_scaffold_7789_15
unknown

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comp(10902..11468)
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_7789_16
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11761..14709)
DNA (2949bp) protein (983aa)
Uncharacterized protein n=1 Tax=Thauera sp. 27 RepID=N6YIN8_9RHOO rbh
Uncharacterized protein {ECO:0000313|EMBL:ENO82048.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_7789_17
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14699..16438)
DNA (1740bp) protein (580aa)
Uncharacterized protein n=1 Tax=Methylomicrobium album BG8 RepID=H8GN40_METAL
Uncharacterized protein {ECO:0000313|EMBL:EIC30754.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
hypothetical protein
Displaying 17 items

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