ggKbase home page

SCNpilot_cont_1000_p_scaffold_6412

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_6412_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1233
DNA (1233bp) protein (411aa)
Conjugal transfer coupling protein TraG n=1 Tax=Ralstonia solanacearum SD54 RepID=V5AHV6_RALSL
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KIO48703.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
traG; conjugal transfer protein TraG/VirD4
SCNpilot_cont_1000_p_scaffold_6412_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1197..1745
DNA (549bp) protein (183aa)
Type IV secretory pathway protease n=1 Tax=Ralstonia solanacearum SD54 RepID=V5A224_RALSL
Conjugal transfer protein TraF {ECO:0000313|EMBL:KIO48704.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Type IV secretory pathway protease TraF-like
SCNpilot_cont_1000_p_scaffold_6412_3
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1742..2260
DNA (519bp) protein (173aa)
Lytic transglycosylase, catalytic n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae KPNIH18 RepID=J2HUF1_KLEPN
Lytic transglycosylase, catalytic {ECO:0000313|EMBL:CDG90691.1}; TaxID=1397852 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii str. feltiae Florida.;"
lytic transglycosylase, catalytic; K03194 type IV secretion system protein VirB1
SCNpilot_cont_1000_p_scaffold_6412_4
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2302..3546)
DNA (1245bp) protein (415aa)
Conjugal transfer protein TrbI n=2 Tax=Proteobacteria RepID=V5CHL3_RALSL
Conjugation TrbI family protein {ECO:0000313|EMBL:CDH02258.1}; TaxID=1398200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii str. feltiae Moldova.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_cont_1000_p_scaffold_6412_5
unknown

Not on your lists

comp(3585..4019)
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_6412_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4037..4960)
DNA (924bp) protein (308aa)
Putative mating pair formation protein n=2 Tax=Ralstonia solanacearum RepID=V5AS01_RALSL rbh
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KIO48705.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_cont_1000_p_scaffold_6412_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4942..5622)
DNA (681bp) protein (227aa)
conjugal transfer protein n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002376FBC
Conjugal transfer protein {ECO:0000313|EMBL:KIO48643.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
conjugal transfer protein; K03200 type IV secretion system protein VirB5
SCNpilot_cont_1000_p_scaffold_6412_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5619..6785)
DNA (1167bp) protein (389aa)
P-type conjugative transfer protein TrbL n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SDQ4_CITFR
Uncharacterized protein {ECO:0000313|EMBL:KIO48644.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
trbL; P-type conjugative transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_cont_1000_p_scaffold_6412_9
unknown

Not on your lists

comp(7053..7253)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_6412_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7255..7854)
DNA (600bp) protein (200aa)
P-type conjugative transfer protein TrbJ n=3 Tax=Escherichia coli RepID=I2YAD0_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KIO48646.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
trbJ; P-type conjugative transfer protein TrbJ
Displaying 10 items

View Taxonomy