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SCNpilot_cont_1000_p_scaffold_6814

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_6814_1
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(85..477)
DNA (393bp) protein (131aa)
aldehyde dehydrogenase (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Aldehyde dehydrogenase n=2 Tax=Agrobacterium RepID=F0LC63_AGRSH
Aldehyde dehydrogenase {ECO:0000313|EMBL:ADY66673.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_cont_1000_p_scaffold_6814_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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529..927
DNA (399bp) protein (133aa)
Insertion sequence transposase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3V6_9RHIZ
Insertion sequence transposase protein {ECO:0000313|EMBL:EYR83851.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
insertion sequence transposase; K07483 transposase
SCNpilot_cont_1000_p_scaffold_6814_3
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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924..1271
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035DD0F2
Isocitrate lyase {ECO:0000313|EMBL:KJF74631.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
transposase IS66 family, ORF2
SCNpilot_cont_1000_p_scaffold_6814_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1337..1609
DNA (273bp) protein (91aa)
Transposase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJE9_9RHIZ
Transposase {ECO:0000313|EMBL:EYR83853.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transposase IS66
SCNpilot_cont_1000_p_scaffold_6814_5
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1611..2681
DNA (1071bp) protein (357aa)
transposase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003727E4B rbh
Transposase {ECO:0000313|EMBL:KJF74630.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
transposase IS66
SCNpilot_cont_1000_p_scaffold_6814_6
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2624..3826)
DNA (1203bp) protein (401aa)
Orf_Bo120 n=1 Tax=Rhizobium radiobacter RepID=A5WY39_RHIRD rbh
Transposase {ECO:0000313|EMBL:KGE79641.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
transposase IS116/IS110/IS902 rbh
SCNpilot_cont_1000_p_scaffold_6814_7
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4062..4352
DNA (291bp) protein (97aa)
transposase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003727E4B
Transposase {ECO:0000313|EMBL:KJF74630.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
transposase
SCNpilot_cont_1000_p_scaffold_6814_8
unknown

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4434..4886
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_6814_9
unknown

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4911..5144
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_6814_10
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5161..6264)
DNA (1104bp) protein (368aa)
NAD-dependent aldehyde dehydrogenase (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
NAD-dependent aldehyde dehydrogenase n=1 Tax=Herbaspirillum sp. CF444 RepID=J3DA67_9BURK
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJL87834.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
SCNpilot_cont_1000_p_scaffold_6814_11
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6280..6972)
DNA (693bp) protein (231aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HV17_9RHIZ
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJN06726.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_cont_1000_p_scaffold_6814_12
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6969..7643)
DNA (675bp) protein (225aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Phyllobacterium sp. YR531 RepID=J2W2G2_9RHIZ
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJN06725.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
inner membrane amino-acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_cont_1000_p_scaffold_6814_13
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7699..7971)
DNA (273bp) protein (91aa)
Amino acid ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JMT3_AGRRK
amino acid ABC transporter
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAJ92113.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
Displaying 13 items

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