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SCNpilot_cont_1000_p_scaffold_5087

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_5087_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..163
DNA (162bp) protein (54aa)
Conjugal transfer protein TrbL n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YNX2_9SPHN
Conjugal transfer protein TrbL {ECO:0000313|EMBL:GAD50585.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
P-type conjugative transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_cont_1000_p_scaffold_5087_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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160..849
DNA (690bp) protein (230aa)
conjugal transfer protein TrbF n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00037A27FF rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KFL26211.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_cont_1000_p_scaffold_5087_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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846..1829
DNA (984bp) protein (328aa)
Conjugal transfer protein TrbG n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YPJ1_9SPHN rbh
Conjugal transfer protein TrbG {ECO:0000313|EMBL:GAD50587.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_cont_1000_p_scaffold_5087_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1829..2995
DNA (1167bp) protein (389aa)
conjugal transfer protein TraI n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI0003652D90 rbh
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
Conjugation TrbI family protein {ECO:0000313|EMBL:ADU42487.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_1000_p_scaffold_5087_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2997..3221
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZYX5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50589.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_5087_6
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3281..3844)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YKW7_MOBAS
DNA repair protein {ECO:0000313|EMBL:EZQ15006.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_5087_7
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3844..4053)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MJW6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW17044.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_5087_8

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comp(4083..4667)
DNA (585bp) protein (195aa)
Putative TetR family transcriptional regulator n=1 Tax=uncultured bacterium RepID=C6KTJ5_9BACT
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:BAH89293.1}; TetR family transcriptional regulator {ECO:0000313|EMBL:BAH90238.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TetR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_5087_9
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5009..5992
DNA (984bp) protein (328aa)
Transcriptional regulator, LysR family n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ID46_XANP2 rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABS65939.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_1000_p_scaffold_5087_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6359..6574)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N7N6_RHOPA
hypothetical protein; K06922
Uncharacterized protein {ECO:0000313|EMBL:CAE27662.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_1000_p_scaffold_5087_11
unknown

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comp(6592..6705)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_5087_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6683..7609)
DNA (927bp) protein (309aa)
Thiamine biosynthesis lipoprotein ApbE n=2 Tax=Oligotropha carboxidovorans RepID=B6JDT7_OLICO rbh
thiamine biosynthesis lipoprotein ApbE; K03734 thiamine biosynthesis lipoprotein rbh
Thiamine biosynthesis lipoprotein ApbE {ECO:0000313|EMBL:AEI07755.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_1000_p_scaffold_5087_13
Brucella sp. 83/13, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7641..8237)
DNA (597bp) protein (199aa)
sulfite reductase; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
Oxidoreductase FAD/NAD(P)-binding subunit n=2 Tax=Brucella RepID=D1CZY5_9RHIZ
Oxidoreductase FAD/NAD(P)-binding subunit {ECO:0000313|EMBL:EEZ33828.1}; TaxID=520449 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. 83/13.;"
Displaying 13 items

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