ggKbase home page

SCNpilot_cont_1000_p_scaffold_93

Search features with annotation key words

Displaying items 1-30 of 343 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_93_1
unknown

Not on your lists

comp(23..220)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_93_2
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

303..533
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0I0N9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB05225.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
SCNpilot_cont_1000_p_scaffold_93_3
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(686..1342)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FP34_PHAMO
Uncharacterized protein {ECO:0000313|EMBL:CCG40122.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_93_4
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1401..1646
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2L4D9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AJD53581.1}; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_93_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2281..2766)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B37F74
Uncharacterized protein {ECO:0000313|EMBL:GAO55979.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_93_6
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2773..3594)
DNA (822bp) protein (274aa)
nitrilase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B74240 rbh
Nitrilase {ECO:0000313|EMBL:EQB11974.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase rbh
SCNpilot_cont_1000_p_scaffold_93_7
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3596..3859)
DNA (264bp) protein (88aa)
glutaredoxin n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B78C33
Glutaredoxin {ECO:0000313|EMBL:EJU12332.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
glutaredoxin; K03676 glutaredoxin 3
SCNpilot_cont_1000_p_scaffold_93_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4025..4495
DNA (471bp) protein (157aa)
Heat shock protein Hsp20 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6S0_NOVAD
16 kDa heat shock protein A {ECO:0000313|EMBL:GAO55975.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
heat shock protein Hsp20; K04080 molecular chaperone IbpA
SCNpilot_cont_1000_p_scaffold_93_9
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4566..5549)
DNA (984bp) protein (328aa)
LuxR family transcriptional regulator n=1 Tax=Sphingomonas sp. LH128 RepID=J8VWG3_9SPHN
LuxR family transcriptional regulator {ECO:0000313|EMBL:EZP81792.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
LuxR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_93_10
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5791..6684
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y5N1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD48431.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
alpha/beta hydrolase
SCNpilot_cont_1000_p_scaffold_93_11
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6688..7053)
DNA (366bp) protein (122aa)
feruloyl-CoA synthase n=1 Tax=Rhizobium RepID=UPI0003828650
Uncharacterized protein {ECO:0000313|EMBL:EJL58635.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_93_12
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7248..8270
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICP5_9SPHN rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCA90070.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_1000_p_scaffold_93_13
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8287..9396
DNA (1110bp) protein (370aa)
Bacterial capsule synthesis protein PGA_cap n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IMJ4_9BURK rbh
Bacterial capsule synthesis protein PGA_cap {ECO:0000313|EMBL:EIF31946.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
poly-gamma-glutamate biosynthesis protein; K07282 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein) rbh
SCNpilot_cont_1000_p_scaffold_93_14
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9690..12107
DNA (2418bp) protein (806aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028873C3 rbh
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAM01332.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
TonB-dependent outer membrane receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_cont_1000_p_scaffold_93_15
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12230..12865)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CBFF3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25079.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_1000_p_scaffold_93_16
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13181..14461
DNA (1281bp) protein (427aa)
PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S8F1_9SPHN rbh
PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase rbh
PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:AGH51238.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_1000_p_scaffold_93_17
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14458..17583)
DNA (3126bp) protein (1042aa)
Cation/multidrug efflux pump acrB n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E734_9SPHN rbh
Cation/multidrug efflux pump acrB {ECO:0000313|EMBL:EHJ62861.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
acrB; cation/multidrug efflux pump AcrB rbh
SCNpilot_cont_1000_p_scaffold_93_18
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17588..18670)
DNA (1083bp) protein (361aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E735_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EHJ62862.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
RND family efflux transporter
SCNpilot_cont_1000_p_scaffold_93_19
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18667..20118)
DNA (1452bp) protein (484aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0ISG5_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB14765.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
RND efflux system outer membrane lipoprotein rbh
SCNpilot_cont_1000_p_scaffold_93_20
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20236..20931
DNA (696bp) protein (232aa)
Putative two-component response regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A647_9SPHN
Putative two-component response regulator {ECO:0000313|EMBL:GAD50213.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
two component transcriptional regulator, winged helix family
SCNpilot_cont_1000_p_scaffold_93_21
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20928..22214
DNA (1287bp) protein (429aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Fragment;; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
Putative two-component histidine kinase (Fragment) n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXU3_9SPHN
cpxA; Sensor protein cpxA
SCNpilot_cont_1000_p_scaffold_93_22
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22341..23339
DNA (999bp) protein (333aa)
Poly (3-hydroxybutyrate) depolymerase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IFV0_BEII9 rbh
poly (3-hydroxybutyrate) depolymerase rbh
Poly (3-hydroxybutyrate) depolymerase {ECO:0000313|EMBL:ACB95689.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_1000_p_scaffold_93_23
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23682..26495
DNA (2814bp) protein (938aa)
TonB-dependent receptor n=1 Tax=Sphingobium indicum B90A RepID=I5BEH1_9SPHN rbh
TonB-dependent receptor {ECO:0000313|EMBL:AJR24363.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
TonB-dependent receptor rbh
SCNpilot_cont_1000_p_scaffold_93_24
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26586..27332
DNA (747bp) protein (249aa)
Conserved hypothetical integral membrane protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V3C4_SPHWW rbh
Uncharacterized protein {ECO:0000313|EMBL:AKH42345.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K09125 hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_93_25
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27607..27810)
DNA (204bp) protein (68aa)
Phage shock protein C, PspC n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5E2_NOVAD
phage shock protein C, PspC
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
SCNpilot_cont_1000_p_scaffold_93_26
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28002..29084
DNA (1083bp) protein (361aa)
DNA replication and repair protein RecF n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZSV6_9SPHN rbh
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
DNA replication and repair protein RecF; K03629 DNA replication and repair protein RecF rbh
SCNpilot_cont_1000_p_scaffold_93_27
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29138..29890)
DNA (753bp) protein (251aa)
3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:ABD25872.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ABD25872.1};; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
3-oxoacyl-ACP synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B75872 rbh
SCNpilot_cont_1000_p_scaffold_93_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29894..30784)
DNA (891bp) protein (297aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
[acyl-carrier-protein] S-malonyltransferase (EC:2.3.1.39); K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] rbh
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8F2_NOVAD rbh
SCNpilot_cont_1000_p_scaffold_93_29
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30910..31722)
DNA (813bp) protein (271aa)
muramoyltetrapeptide carboxypeptidase (EC:3.4.17.13); K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
Putative MccF-like protein (Microcin C7 resistance) n=1 Tax=Novosphingobium sp. AP12 RepID=J2G558_9SPHN rbh
Putative MccF-like protein (Microcin C7 resistance) {ECO:0000313|EMBL:EJL24825.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_cont_1000_p_scaffold_93_30
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31837..33243
DNA (1407bp) protein (469aa)
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8) rbh
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8F4_NOVAD rbh
UDP-N-acetylmuramate--alanine ligase {ECO:0000313|EMBL:KHK91748.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
Displaying items 1-30 of 343 in total

View Taxonomy