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SCNpilot_cont_1000_p_scaffold_2206

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Displaying 18 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2206_1
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1098)
DNA (1098bp) protein (366aa)
transposase, partial n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5E542 rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB12535.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
transposase
SCNpilot_cont_1000_p_scaffold_2206_2
unknown

Not on your lists

1129..1446
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2206_3
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1521..1913)
DNA (393bp) protein (131aa)
transposase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B53217
Uncharacterized protein {ECO:0000313|EMBL:EQB13022.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
transposase; K07483 transposase
SCNpilot_cont_1000_p_scaffold_2206_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2173..2577)
DNA (405bp) protein (135aa)
UPI0003D6936F related cluster n=1 Tax=unknown RepID=UPI0003D6936F
MerR family transcriptional regulator {ECO:0000313|EMBL:KHA64812.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
MerR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_2206_5
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2646..3299
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037E8DC4
Co/Zn/Cd efflux system component {ECO:0000313|EMBL:KEZ14279.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
cation efflux protein
SCNpilot_cont_1000_p_scaffold_2206_6
unknown

Not on your lists

3334..3546
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2206_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3636..4064)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003653328
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD26572.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_1000_p_scaffold_2206_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4126..4848)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000369465B rbh
Sphingomonas taxi strain 30a NODE_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26873.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2206_9
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4880..7231)
DNA (2352bp) protein (784aa)
copA; cation transport ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] rbh
Copper-transporting P-type ATPase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J5I4_9SPHN rbh
Copper-transporting P-type ATPase {ECO:0000313|EMBL:EQB33216.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
SCNpilot_cont_1000_p_scaffold_2206_10
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7269..8204)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000361CFF5 rbh
Copper resistance protein CopD {ECO:0000313|EMBL:AKH18789.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
copD; copper resistance protein CopD; K07245 putative copper resistance protein D
SCNpilot_cont_1000_p_scaffold_2206_11
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8209..8592)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000373C56E
copC; copper resistance protein CopC; K07156
Copper resistance protein CopC {ECO:0000313|EMBL:BAI95320.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_cont_1000_p_scaffold_2206_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9002..9436
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000371DE5D
heavy metal resistance protein
Heavy metal resistance protein {ECO:0000313|EMBL:BAK67775.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_1000_p_scaffold_2206_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9433..9999
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00035D50C6 rbh
FecI sigma-24 factor {ECO:0000313|EMBL:AKH18793.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
rpoE; ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_1000_p_scaffold_2206_14
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10065..11993
DNA (1929bp) protein (643aa)
copper-binding protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003748463 rbh
Putative multicopper oxidase {ECO:0000313|EMBL:KHS45212.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
copper resistance protein CopA rbh
SCNpilot_cont_1000_p_scaffold_2206_15
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11990..13093
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00037FD112 rbh
Copper resistance protein CopB {ECO:0000313|EMBL:EQB04103.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
copper resistance B; K07233 copper resistance protein B rbh
SCNpilot_cont_1000_p_scaffold_2206_16
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13115..14638
DNA (1524bp) protein (508aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
PAS/PAC sensor signal transduction histidine kinase; K14986 two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3] rbh
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000380409E rbh
SCNpilot_cont_1000_p_scaffold_2206_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14628..15236
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000364CCE8 rbh
Response regulator UhpA {ECO:0000313|EMBL:KHS49403.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
two component LuxR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_2206_18
unknown

Not on your lists

15695..15811
DNA (117bp) protein (39aa)

This feature has no annotations

Displaying 18 items

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