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SCNpilot_cont_1000_p_scaffold_31

Search features with annotation key words

Displaying items 1-30 of 253 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_31_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..197)
DNA (195bp) protein (65aa)
C4-dicarboxylate ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003759709
dctA2; C4-dicarboxylate transport protein DctA
C4-dicarboxylate transport protein {ECO:0000256|HAMAP-Rule:MF_01300}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_31_2
unknown

Not on your lists

comp(207..368)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_31_3
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(632..1492)
DNA (861bp) protein (287aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123K9_POLSJ rbh
Uncharacterized protein {ECO:0000313|EMBL:AIJ47627.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_1000_p_scaffold_31_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1533..3212
DNA (1680bp) protein (560aa)
argininosuccinate lyase (EC:4.3.2.1); K01755 argininosuccinate lyase [EC:4.3.2.1] rbh
Argininosuccinate lyase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123L3_POLSJ rbh
Argininosuccinate lyase {ECO:0000313|EMBL:KGH31470.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_cont_1000_p_scaffold_31_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3346..4305
DNA (960bp) protein (320aa)
Uncharacterized protein UPF0065 n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UK7_CUPPJ rbh
MFS transporter {ECO:0000313|EMBL:AIJ47625.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_31_6
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4393..5004
DNA (612bp) protein (204aa)
ParB-like nuclease n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YNF6_9RHIZ
ParB-like nuclease {ECO:0000313|EMBL:EMS41950.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
putative ParB-like nuclease
SCNpilot_cont_1000_p_scaffold_31_7
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(5048..6070)
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003611B29 rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
SCNpilot_cont_1000_p_scaffold_31_8
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6163..7167)
DNA (1005bp) protein (335aa)
twin-arginine translocation pathway signal n=1 Tax=Variovorax paradoxus RepID=UPI0003796D53 rbh
Uncharacterized protein {ECO:0000313|EMBL:ETF00599.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_31_9
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7338..8024
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000369AE65
FCD domain protein {ECO:0000313|EMBL:KDD61358.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
GntR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_31_10
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8192..9583
DNA (1392bp) protein (464aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000365F0AF rbh
Uncharacterized protein {ECO:0000313|EMBL:EIT70794.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_31_11
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9576..9884
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000369B266
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCNpilot_cont_1000_p_scaffold_31_12
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9909..11270)
DNA (1362bp) protein (454aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, hybrid ATPase/permease components protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IY98_HERSS rbh
nitrate/sulfonate/bicarbonate ABC transporter ATPase/permease; K02049 NitT/TauT family transport system ATP-binding protein rbh
ABC-type nitrate/sulfonate/bicarbonate transport system, hybrid ATPase/permease components protein {ECO:0000313|EMBL:ADJ62058.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
SCNpilot_cont_1000_p_scaffold_31_13
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11273..13015)
DNA (1743bp) protein (581aa)
ABC-type anion transport system, duplicated permease component protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IY99_HERSS rbh
anion ABC transporter permease; K02050 NitT/TauT family transport system permease protein rbh
ABC-type anion transport system, duplicated permease component protein {ECO:0000313|EMBL:ADJ62059.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
SCNpilot_cont_1000_p_scaffold_31_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13278..13478)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TNQ0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80342.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_31_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13826..14155)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037409B5
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35446.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_31_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14167..15186)
DNA (1020bp) protein (340aa)
extracytoplasmic binding receptor n=1 Tax=Variovorax paradoxus RepID=UPI00036F57A7 rbh
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35251.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
tctC; extracytoplasmic binding receptor rbh
SCNpilot_cont_1000_p_scaffold_31_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15611..17455)
DNA (1845bp) protein (615aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000375E412 rbh
integrase family protein rbh
Integrase family protein {ECO:0000313|EMBL:ACS22676.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_31_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19960..21045)
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036B2BCD rbh
parB-like partition protein; K03497 chromosome partitioning protein, ParB family rbh
ParB-like partition protein {ECO:0000313|EMBL:ACS22673.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_31_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21379..22620)
DNA (1242bp) protein (414aa)
chromosome partitioning protein ParA n=1 Tax=Variovorax paradoxus RepID=UPI0003693412 rbh
Cobyrinic acid ac-diamide synthase rbh
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ACS22672.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_31_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23169..24539
DNA (1371bp) protein (457aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003658EBE rbh
putative replication protein rbh
Putative replication protein {ECO:0000313|EMBL:AGU53687.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_31_21
Paenibacillus sp. JCM 10914, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24697..25620
DNA (924bp) protein (308aa)
Malate dehydrogenase n=1 Tax=Paenibacillus sp. JCM 10914 RepID=V9GBL3_9BACL rbh
Malate dehydrogenase {ECO:0000313|EMBL:GAE06244.1}; TaxID=1236974 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. JCM 10914.;"
malate/L-lactate dehydrogenase family protein rbh
SCNpilot_cont_1000_p_scaffold_31_22
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25621..26544)
DNA (924bp) protein (308aa)
LysR family regulatory helix-turn-helix protein 73 n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T5U0_ALCXX rbh
LysR family regulatory helix-turn-helix protein 73 {ECO:0000313|EMBL:EGP44307.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
transcriptional regulator, LysR family rbh
SCNpilot_cont_1000_p_scaffold_31_23
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26639..30295
DNA (3657bp) protein (1219aa)
Transport ATP-binding protein CydCD n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XTF6_ALCXX rbh
Transport ATP-binding protein CydCD rbh
ABC efflux pump {ECO:0000313|EMBL:EFV84710.1}; ABC transporter {ECO:0000313|EMBL:AIR51234.1}; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans C54.;"
SCNpilot_cont_1000_p_scaffold_31_24
unknown

Not on your lists

30292..30768
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_31_25
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30926..31624
DNA (699bp) protein (233aa)
TonB family protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GVX3_PUSST
TonB family protein
TonB family protein {ECO:0000313|EMBL:AEC18805.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
SCNpilot_cont_1000_p_scaffold_31_26
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31621..32124
DNA (504bp) protein (168aa)
Sigma-24 n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GVY7_PUSST
sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Sigma-24 {ECO:0000313|EMBL:AEC18819.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
SCNpilot_cont_1000_p_scaffold_31_27
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32258..33268
DNA (1011bp) protein (337aa)
Putative FecR n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GVX5_PUSST rbh
FecR protein rbh
Putative FecR {ECO:0000313|EMBL:AEC18807.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
SCNpilot_cont_1000_p_scaffold_31_28
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33419..45838
DNA (12420bp) protein (4140aa)
Filamentous haemagglutinin-like protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IXX1_RHOP2 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJZ74922.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
filamentous hemagglutinin-like protein rbh
SCNpilot_cont_1000_p_scaffold_31_29
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45928..46464
DNA (537bp) protein (179aa)
RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SZB4_JANMA
Uncharacterized protein {ECO:0000313|EMBL:KDP88703.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
rpoE4; ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_1000_p_scaffold_31_30
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46653..47894
DNA (1242bp) protein (414aa)
Serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] rbh
Penicillin-binding protein 6. Serine peptidase. MEROPS family S11 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21ZY6_RHOFD rbh
Penicillin-binding protein 6. Serine peptidase. MEROPS family S11 {ECO:0000313|EMBL:ABD68667.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
Displaying items 1-30 of 253 in total

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