name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_cont_1000_p_scaffold_135_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3..158
|
CsgG-like protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X423_VARPD
CsgG-like protein
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:ACS16714.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_cont_1000_p_scaffold_135_2
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
306..1283
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000360E267
rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP17226.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
|
|
SCNpilot_cont_1000_p_scaffold_135_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1280..1969
|
LuxR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000379921E
rbh
two component LuxR family transcriptional regulator
rbh
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ADU36773.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_1000_p_scaffold_135_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1911..3854
|
histidine kinase n=1 Tax=Variovorax paradoxus RepID=UPI000364151A
rbh
signal transduction histidine kinase
rbh
Putative signal transduction histidine kinase {ECO:0000313|EMBL:ADU36772.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_1000_p_scaffold_135_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3861..4202)
|
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0S0_VARPE
Variovorax paradoxus strain MEDvA23 contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ30930.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
|
|
SCNpilot_cont_1000_p_scaffold_135_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4226..5713)
|
peptidase n=1 Tax=Variovorax paradoxus RepID=UPI0003602E1C
rbh
Periplasmic serine protease, Do/DeqQ family {ECO:0000313|EMBL:EJL73917.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_1000_p_scaffold_135_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5814..7142)
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Signal transduction histidine kinase n=1 Tax=Variovorax sp. CF313 RepID=J2KLG8_9BURK
rbh
putative signal transduction histidine kinase
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7139..7798)
|
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Variovorax sp. CF313 RepID=J3CLC0_9BURK
rbh
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EJL73919.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
winged helix family two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7862..8632)
|
Beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family n=1 Tax=Variovorax sp. CF313 RepID=J2K195_9BURK
rbh
Beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family {ECO:0000313|EMBL:EJL73920.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8774..9955
|
4-hydroxybenzoate 3-monooxygenase (EC:1.14.13.2); K00481 p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
rbh
4-hydroxybenzoate 3-monooxygenase {ECO:0000313|EMBL:ADU36766.1}; EC=1.14.13.2 {ECO:0000313|EMBL:ADU36766.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
4-hydroxybenzoate 3-monooxygenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0R5_VARPE
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9952..10356)
|
Polyketide cyclase / dehydrase and lipid transport n=1 Tax=Variovorax sp. CF313 RepID=J2T784_9BURK
Polyketide cyclase / dehydrase and lipid transport {ECO:0000313|EMBL:EJL73922.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
|
|
SCNpilot_cont_1000_p_scaffold_135_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10370..11269)
|
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036D3D44
rbh
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EJL73923.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, AraC family
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11304..13634)
|
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase protein; K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2]
rbh
carbon monoxide dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI000364129E
rbh
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein {ECO:0000313|EMBL:EJL73924.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_1000_p_scaffold_135_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13871..14635
|
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
leucyl/phenylalanyL-tRNA/protein transferase (EC:2.3.2.6); K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6]
rbh
leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Variovorax paradoxus RepID=UPI000374B9C6
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14632..15381
|
arginine-tRNA-protein transferase domain-containing protein; K00685 arginine-tRNA-protein transferase [EC:2.3.2.8]
rbh
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
arginyl-tRNA-protein transferase n=1 Tax=Variovorax paradoxus RepID=UPI00035C80E0
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15412..16233
|
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2T789_9BURK
rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL73927.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
IclR family transcriptional regulator
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16309..17514)
|
peptidase s11 D-alanyL-D-alanine carboxypeptidase 1; K07262 D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
rbh
peptidase S11 n=1 Tax=Variovorax paradoxus RepID=UPI00038029AB
rbh
Variovorax paradoxus strain MEDvA23 contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ30876.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
|
|
SCNpilot_cont_1000_p_scaffold_135_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17632..19170)
|
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
2-isopropylmalate synthase n=1 Tax=Variovorax paradoxus RepID=UPI000375EB27
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19234..20937)
|
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
2-isopropylmalate synthase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYP1_VARPS
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21148..21972)
|
cdp-diacylglycerol/serine o-phosphatidyltransferase; K00998 phosphatidylserine synthase [EC:2.7.8.8]
rbh
CDP-diacylglycerol/serine O-phosphatidyltransferase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0Q4_VARPE
rbh
CDP-diacylglycerol/serine O-phosphatidyltransferase {ECO:0000313|EMBL:ADU36755.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_1000_p_scaffold_135_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22156..23172)
|
ilvC; ketol-acid reductoisomerase IlvC (EC:1.1.1.86)
rbh
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Ketol-acid reductoisomerase n=1 Tax=Variovorax paradoxus B4 RepID=T1XBT9_VARPD
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23226..23489)
|
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XBD7_VARPD
Variovorax paradoxus strain MEDvA23 contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ30871.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
|
|
SCNpilot_cont_1000_p_scaffold_135_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23543..24034)
|
acetolactate synthase, small subunit; K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
rbh
Acetolactate synthase, small subunit n=1 Tax=Variovorax sp. CF313 RepID=J3CLD0_9BURK
rbh
Acetolactate synthase, small subunit {ECO:0000313|EMBL:EJL73934.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_1000_p_scaffold_135_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24139..25923)
|
Variovorax paradoxus strain MEDvA23 contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ30869.1}; EC=2.2.1.6 {ECO:0000313|EMBL:KIQ30869.1};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
acetolactate synthase, large subunit, biosynthetic type; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
rbh
Acetolactate synthase, large subunit, biosynthetic type n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0Q0_VARPE
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26205..26771
|
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0P9_VARPE
rbh
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
rbh
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADU36750.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_1000_p_scaffold_135_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26768..27190
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2T7A1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL73937.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transmembrane protein
|
|
SCNpilot_cont_1000_p_scaffold_135_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27207..28031
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KLI9_9BURK
rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL73938.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transmembrane protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28046..28612
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00038005AD
rbh
Variovorax paradoxus strain MEDvA23 contig_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37512.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
rdd domain containing protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_135_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28609..29016
|
diacylglycerol kinase; K00901 diacylglycerol kinase [EC:2.7.1.107]
diacylglycerol kinase n=1 Tax=Variovorax paradoxus RepID=UPI0003826341
Variovorax paradoxus strain MEDvA23 contig_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37513.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
|
|
SCNpilot_cont_1000_p_scaffold_135_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
29048..29638
|