name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_cont_1000_p_scaffold_221_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(454..1296)
|
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Variovorax sp. CF313 RepID=J3CW72_9BURK
rbh
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:EJL79476.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ABC transporter, substrate-binding protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1361..2152)
|
ABC transporter related n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D211_VARPS
rbh
ABC transporter related {ECO:0000313|EMBL:ACS22931.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_cont_1000_p_scaffold_221_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2149..2928)
|
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D210_VARPS
rbh
polar amino acid ABC transporter, inner membrane subunit; K02029 polar amino acid transport system permease protein
rbh
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ACS22930.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_cont_1000_p_scaffold_221_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2950..3651)
|
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Variovorax sp. CF313 RepID=J2L2J9_9BURK
rbh
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJL79473.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
amino acid ABC transporter, permease protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3692..4444)
|
Short-chain alcohol dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2TLJ7_9BURK
rbh
Short-chain alcohol dehydrogenase {ECO:0000313|EMBL:EJL79472.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative oxidoreductase, SDR family
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4611..5375)
|
UPF0271 protein PMI12_00649 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LamB/YcsF family protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5404..5802)
|
Biotin/lipoyl attachment domain-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XLW0_VARPD
biotin/lipoyl attachment domain-containing protein
Biotin/lipoyl attachment domain-containing protein {ECO:0000313|EMBL:AGU53289.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_1000_p_scaffold_221_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5921..6904)
|
Biotin-dependent carboxylase-like protein n=1 Tax=Variovorax sp. CF313 RepID=J3CVQ5_9BURK
rbh
Biotin-dependent carboxylase-like protein {ECO:0000313|EMBL:EJL79469.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
urea amidolyase related protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6901..7560)
|
TIGR00370 family protein {ECO:0000313|EMBL:EJL79468.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative allophanate hydrolase, subunit 1
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7557..8909)
|
Acetyl-CoA carboxylase, biotin carboxylase subunit n=1 Tax=Variovorax sp. CF313 RepID=J2TLI9_9BURK
rbh
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:EJL79467.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_1000_p_scaffold_221_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8923..9417)
|
Biotin carboxyl carrier protein n=1 Tax=Variovorax sp. CF313 RepID=J3CW65_9BURK
Biotin carboxyl carrier protein {ECO:0000313|EMBL:EJL79466.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
acetyl-CoA carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
|
|
SCNpilot_cont_1000_p_scaffold_221_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9481..10485)
|
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KGZ0_9BURK
rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL79465.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nitrogen assimilation transcriptional regulator
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10563..11777
|
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Variovorax sp. CF313 RepID=J3CVQ1_9BURK
rbh
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:EJL79464.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative aspartate aminotransferase
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11804..12475
|
Demethylmenaquinone methyltransferase n=1 Tax=Variovorax sp. CF313 RepID=J2L2I8_9BURK
rbh
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:EJL79463.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12485..13411)
|
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2TLI4_9BURK
rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL79462.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, LysR family
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13520..14458
|
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=Variovorax sp. CF313 RepID=J3CW62_9BURK
rbh
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:EJL79461.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_1000_p_scaffold_221_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14517..15488
|
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6R0_VARPE
rbh
hypothetical protein
rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU36016.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_1000_p_scaffold_221_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15478..16188
|
3-oxoacyl-ACP reductase n=1 Tax=Variovorax paradoxus RepID=UPI00037AD3A8
rbh
short-chain dehydrogenase/reductase sdr
rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU36015.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_1000_p_scaffold_221_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16226..17392
|
mandelate racemase n=1 Tax=Variovorax paradoxus RepID=UPI000360F324
rbh
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:EJL79458.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
mandelate racemase/muconate lactonizing protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17530..18315
|
Exodeoxyribonuclease III n=1 Tax=Variovorax sp. CF313 RepID=J3CVN8_9BURK
rbh
Exodeoxyribonuclease III {ECO:0000313|EMBL:EJL79166.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_1000_p_scaffold_221_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18320..18871
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KG45_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79165.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
|
|
SCNpilot_cont_1000_p_scaffold_221_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18918..20453)
|
Nitrogen regulation protein NR(I) n=1 Tax=Variovorax sp. CF313 RepID=J3CV71_9BURK
rbh
Nitrogen regulation protein NR(I) {ECO:0000313|EMBL:EJL79164.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nitrogen regulation protein NR(I)
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20481..21560)
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nitrogen specific signal transduction histidine kinase NtrB; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
rbh
Signal transduction histidine kinase, nitrogen specific n=1 Tax=Variovorax sp. CF313 RepID=J2L1P6_9BURK
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21589..22098)
|
signal peptide protein n=1 Tax=Variovorax paradoxus RepID=UPI0003659150
signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:ACS18284.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_cont_1000_p_scaffold_221_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22239..23654)
|
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Glutamine synthetase n=1 Tax=Variovorax sp. CF313 RepID=J3CVN5_9BURK
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23801..24601)
|
damage-inducible protein n=1 Tax=Variovorax paradoxus RepID=UPI00037E1512
rbh
Putative nuleotide-utilizing enzyme, moeA {ECO:0000313|EMBL:EJL79160.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
molybdopterin binding domain
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24598..25488)
|
Putative transmembrane protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6P8_VARPE
rbh
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17679.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
transmembrane protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25539..26513)
|
Sterol desaturase n=1 Tax=Variovorax sp. CF313 RepID=J2L1P2_9BURK
rbh
Sterol desaturase {ECO:0000313|EMBL:EJL79158.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
fatty acid hydroxylase
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26523..27341)
|
Putative xylanase/chitin deacetylase n=1 Tax=Variovorax sp. CF313 RepID=J2TKS5_9BURK
rbh
Putative xylanase/chitin deacetylase {ECO:0000313|EMBL:EJL79157.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
polysaccharide deacetylase
rbh
|
|
SCNpilot_cont_1000_p_scaffold_221_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27325..28329)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036855B9
rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL79156.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
40-residue yvtn family beta-propeller repeat-containing protein
rbh
|