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SCNpilot_cont_1000_p_scaffold_221

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Displaying items 1-30 of 227 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_221_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(454..1296)
DNA (843bp) protein (281aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Variovorax sp. CF313 RepID=J3CW72_9BURK rbh
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:EJL79476.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ABC transporter, substrate-binding protein rbh
SCNpilot_cont_1000_p_scaffold_221_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1361..2152)
DNA (792bp) protein (264aa)
ABC transporter; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21] rbh
ABC transporter related n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D211_VARPS rbh
ABC transporter related {ECO:0000313|EMBL:ACS22931.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_221_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2149..2928)
DNA (780bp) protein (260aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D210_VARPS rbh
polar amino acid ABC transporter, inner membrane subunit; K02029 polar amino acid transport system permease protein rbh
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ACS22930.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_221_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2950..3651)
DNA (702bp) protein (234aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Variovorax sp. CF313 RepID=J2L2J9_9BURK rbh
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJL79473.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
amino acid ABC transporter, permease protein rbh
SCNpilot_cont_1000_p_scaffold_221_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3692..4444)
DNA (753bp) protein (251aa)
Short-chain alcohol dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2TLJ7_9BURK rbh
Short-chain alcohol dehydrogenase {ECO:0000313|EMBL:EJL79472.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative oxidoreductase, SDR family rbh
SCNpilot_cont_1000_p_scaffold_221_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4611..5375)
DNA (765bp) protein (255aa)
UPF0271 protein PMI12_00649 n=1 Tax=Variovorax sp. CF313 RepID=J3CW68_9BURK rbh
UPF0271 protein PMI12_00649 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LamB/YcsF family protein rbh
SCNpilot_cont_1000_p_scaffold_221_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5404..5802)
DNA (399bp) protein (133aa)
Biotin/lipoyl attachment domain-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XLW0_VARPD
biotin/lipoyl attachment domain-containing protein
Biotin/lipoyl attachment domain-containing protein {ECO:0000313|EMBL:AGU53289.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_221_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5921..6904)
DNA (984bp) protein (328aa)
Biotin-dependent carboxylase-like protein n=1 Tax=Variovorax sp. CF313 RepID=J3CVQ5_9BURK rbh
Biotin-dependent carboxylase-like protein {ECO:0000313|EMBL:EJL79469.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
urea amidolyase related protein rbh
SCNpilot_cont_1000_p_scaffold_221_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6901..7560)
DNA (660bp) protein (220aa)
TIGR00370 family protein n=1 Tax=Variovorax sp. CF313 RepID=J2L2J2_9BURK rbh
TIGR00370 family protein {ECO:0000313|EMBL:EJL79468.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative allophanate hydrolase, subunit 1 rbh
SCNpilot_cont_1000_p_scaffold_221_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7557..8909)
DNA (1353bp) protein (451aa)
accC; biotin carboxylase AccC (EC:6.3.4.14 6.4.1.2) rbh
Acetyl-CoA carboxylase, biotin carboxylase subunit n=1 Tax=Variovorax sp. CF313 RepID=J2TLI9_9BURK rbh
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:EJL79467.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_221_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8923..9417)
DNA (495bp) protein (165aa)
Biotin carboxyl carrier protein n=1 Tax=Variovorax sp. CF313 RepID=J3CW65_9BURK
Biotin carboxyl carrier protein {ECO:0000313|EMBL:EJL79466.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
acetyl-CoA carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
SCNpilot_cont_1000_p_scaffold_221_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9481..10485)
DNA (1005bp) protein (335aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KGZ0_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL79465.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nitrogen assimilation transcriptional regulator rbh
SCNpilot_cont_1000_p_scaffold_221_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10563..11777
DNA (1215bp) protein (405aa)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Variovorax sp. CF313 RepID=J3CVQ1_9BURK rbh
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:EJL79464.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative aspartate aminotransferase rbh
SCNpilot_cont_1000_p_scaffold_221_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11804..12475
DNA (672bp) protein (224aa)
Demethylmenaquinone methyltransferase n=1 Tax=Variovorax sp. CF313 RepID=J2L2I8_9BURK rbh
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:EJL79463.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_221_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12485..13411)
DNA (927bp) protein (309aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2TLI4_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL79462.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, LysR family rbh
SCNpilot_cont_1000_p_scaffold_221_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13520..14458
DNA (939bp) protein (313aa)
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] rbh
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=Variovorax sp. CF313 RepID=J3CW62_9BURK rbh
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:EJL79461.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_221_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14517..15488
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6R0_VARPE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU36016.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_221_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15478..16188
DNA (711bp) protein (237aa)
3-oxoacyl-ACP reductase n=1 Tax=Variovorax paradoxus RepID=UPI00037AD3A8 rbh
short-chain dehydrogenase/reductase sdr rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU36015.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_221_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16226..17392
DNA (1167bp) protein (389aa)
mandelate racemase n=1 Tax=Variovorax paradoxus RepID=UPI000360F324 rbh
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:EJL79458.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
mandelate racemase/muconate lactonizing protein rbh
SCNpilot_cont_1000_p_scaffold_221_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17530..18315
DNA (786bp) protein (262aa)
exodeoxyribonuclease iii xth; K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
Exodeoxyribonuclease III n=1 Tax=Variovorax sp. CF313 RepID=J3CVN8_9BURK rbh
Exodeoxyribonuclease III {ECO:0000313|EMBL:EJL79166.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_221_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18320..18871
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KG45_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79165.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_221_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18918..20453)
DNA (1536bp) protein (512aa)
Nitrogen regulation protein NR(I) n=1 Tax=Variovorax sp. CF313 RepID=J3CV71_9BURK rbh
Nitrogen regulation protein NR(I) {ECO:0000313|EMBL:EJL79164.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nitrogen regulation protein NR(I) rbh
SCNpilot_cont_1000_p_scaffold_221_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20481..21560)
DNA (1080bp) protein (360aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nitrogen specific signal transduction histidine kinase NtrB; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] rbh
Signal transduction histidine kinase, nitrogen specific n=1 Tax=Variovorax sp. CF313 RepID=J2L1P6_9BURK rbh
SCNpilot_cont_1000_p_scaffold_221_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21589..22098)
DNA (510bp) protein (170aa)
signal peptide protein n=1 Tax=Variovorax paradoxus RepID=UPI0003659150
signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:ACS18284.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_221_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22239..23654)
DNA (1416bp) protein (472aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] rbh
Glutamine synthetase n=1 Tax=Variovorax sp. CF313 RepID=J3CVN5_9BURK rbh
SCNpilot_cont_1000_p_scaffold_221_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23801..24601)
DNA (801bp) protein (267aa)
damage-inducible protein n=1 Tax=Variovorax paradoxus RepID=UPI00037E1512 rbh
Putative nuleotide-utilizing enzyme, moeA {ECO:0000313|EMBL:EJL79160.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
molybdopterin binding domain rbh
SCNpilot_cont_1000_p_scaffold_221_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24598..25488)
DNA (891bp) protein (297aa)
Putative transmembrane protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6P8_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17679.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
transmembrane protein rbh
SCNpilot_cont_1000_p_scaffold_221_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25539..26513)
DNA (975bp) protein (325aa)
Sterol desaturase n=1 Tax=Variovorax sp. CF313 RepID=J2L1P2_9BURK rbh
Sterol desaturase {ECO:0000313|EMBL:EJL79158.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
fatty acid hydroxylase rbh
SCNpilot_cont_1000_p_scaffold_221_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26523..27341)
DNA (819bp) protein (273aa)
Putative xylanase/chitin deacetylase n=1 Tax=Variovorax sp. CF313 RepID=J2TKS5_9BURK rbh
Putative xylanase/chitin deacetylase {ECO:0000313|EMBL:EJL79157.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
polysaccharide deacetylase rbh
SCNpilot_cont_1000_p_scaffold_221_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27325..28329)
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036855B9 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL79156.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
40-residue yvtn family beta-propeller repeat-containing protein rbh
Displaying items 1-30 of 227 in total

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