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SCNpilot_cont_1000_p_scaffold_234

Search features with annotation key words

Displaying items 1-30 of 161 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_234_1
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(199..1800)
DNA (1602bp) protein (534aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000381F6C7 rbh
Family 5 extracellular solute-binding protein {ECO:0000313|EMBL:EGP47218.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
peptide/opine/nickel ABC transporter substrate-binding protein rbh
SCNpilot_cont_1000_p_scaffold_234_2
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1838..3574)
DNA (1737bp) protein (579aa)
5-oxoprolinase (ATP-hydrolyzing); K01474 N-methylhydantoinase B [EC:3.5.2.14]
5-oxoprolinase n=1 Tax=Variovorax paradoxus RepID=UPI00035E5AD9 rbh
Hydantoin utilization protein B {ECO:0000313|EMBL:EGP47217.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
SCNpilot_cont_1000_p_scaffold_234_3
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3571..5271)
DNA (1701bp) protein (567aa)
5-oxoprolinase (ATP-hydrolyzing); K01474 N-methylhydantoinase B [EC:3.5.2.14] rbh
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI000370F718 rbh
Hydantoin utilization protein B {ECO:0000313|EMBL:EGP47217.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
SCNpilot_cont_1000_p_scaffold_234_4
unknown

Not on your lists

comp(5268..5408)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_234_5
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5405..7561)
DNA (2157bp) protein (719aa)
Hydantoin utilization protein A (EC:3.5.2.14); K01473 N-methylhydantoinase A [EC:3.5.2.14] rbh
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036356BB rbh
Hydantoin utilization protein {ECO:0000313|EMBL:EGP47216.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
SCNpilot_cont_1000_p_scaffold_234_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7593..8807)
DNA (1215bp) protein (405aa)
cystathionine beta-lyase (EC:4.4.1.8); K01760 cystathionine beta-lyase [EC:4.4.1.8] rbh
Cystathionine beta-lyase {ECO:0000313|EMBL:ACS18534.1}; EC=4.4.1.8 {ECO:0000313|EMBL:ACS18534.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
cystathionine beta-lyase n=1 Tax=Variovorax paradoxus RepID=UPI0003824AA2 rbh
SCNpilot_cont_1000_p_scaffold_234_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8804..9445)
DNA (642bp) protein (214aa)
Cysteine dioxygenase type I n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CV86_VARPS rbh
cysteine dioxygenase type I rbh
Cysteine dioxygenase type I {ECO:0000313|EMBL:ACS18535.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_234_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9471..10334)
DNA (864bp) protein (288aa)
ABC transporter; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21] rbh
ABC transporter related n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CV87_VARPS rbh
ABC transporter related {ECO:0000313|EMBL:ACS18536.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_234_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10321..11142)
DNA (822bp) protein (274aa)
amino acid ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI00036F3C87
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ACS18537.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_234_10
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11132..11878)
DNA (747bp) protein (249aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI000370AB3A rbh
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADX46743.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_cont_1000_p_scaffold_234_11
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11875..13113)
DNA (1239bp) protein (413aa)
class I/II aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1]
Aminotransferase class I and II n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9C0T4_DELAS
Aminotransferase class I and II {ECO:0000313|EMBL:ABX38397.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_cont_1000_p_scaffold_234_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13110..13934)
DNA (825bp) protein (275aa)
amino acid ABC transporter n=1 Tax=Cupriavidus sp. WS RepID=UPI00036448C1 rbh
Bacterial extracellular solute-binding s, 3 family protein {ECO:0000313|EMBL:KFJ14400.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
extracellular solute-binding protein
SCNpilot_cont_1000_p_scaffold_234_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14030..14878)
DNA (849bp) protein (283aa)
amino acid ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI00037BA0DA rbh
family 3 extracellular solute-binding protein; K02030 polar amino acid transport system substrate-binding protein rbh
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ACS18538.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_234_14
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14956..16632)
DNA (1677bp) protein (559aa)
sulfurtransferase n=1 Tax=Variovorax paradoxus RepID=UPI00036BD807 rbh
rhodanese-like protein rbh
Rhodanese-like protein {ECO:0000313|EMBL:ADX46741.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_cont_1000_p_scaffold_234_15
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(16774..18141)
DNA (1368bp) protein (456aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003611460 rbh
NHL repeat-containing protein
NHL repeat containing protein {ECO:0000313|EMBL:ABJ86865.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_cont_1000_p_scaffold_234_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18250..20031)
DNA (1782bp) protein (594aa)
histidine kinase n=1 Tax=Variovorax paradoxus RepID=UPI000371ABA7 rbh
putative receiver domain-containing sensor histidine kinase
Putative receiver domain-containing sensor histidine kinase {ECO:0000313|EMBL:AGU51617.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_234_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20072..20755)
DNA (684bp) protein (228aa)
LuxR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000378B13C rbh
two component transcriptional regulator, LuxR family
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AGU51618.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_234_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20988..21422
DNA (435bp) protein (145aa)
glyoxalase n=1 Tax=Variovorax paradoxus RepID=UPI00037F358A
Variovorax paradoxus strain MEDvA23 contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27906.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_cont_1000_p_scaffold_234_19
Asticcacaulis biprosthecium, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21517..22713)
DNA (1197bp) protein (399aa)
translation elongation factor tu (EC:2.7.7.4); K02358 elongation factor Tu
Elongation factor Tu n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QLU0_9CAUL rbh
Elongation factor Tu {ECO:0000256|RuleBase:RU004061}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis biprosthecum C19.;"
SCNpilot_cont_1000_p_scaffold_234_20
unknown

Not on your lists

comp(23098..23190)
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_234_21
unknown

Not on your lists

23376..23915
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000363AC33
SCNpilot_cont_1000_p_scaffold_234_22
unknown

Not on your lists

24521..24931
DNA (411bp) protein (137aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_234_23
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25011..25652
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0UAE4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE53142.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_234_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25784..26656
DNA (873bp) protein (291aa)
Lipase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UWW7_VARPE rbh
lipase rbh
Lipase {ECO:0000313|EMBL:ADU36512.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_234_25
Synechococcus sp. PCC 7502, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

26729..27007
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7502 RepID=K9SZ25_9SYNE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY75044.1}; TaxID=1173263 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. PCC 7502.;"
SCNpilot_cont_1000_p_scaffold_234_26
unknown

Not on your lists

comp(27353..27547)
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036B0FC6
SCNpilot_cont_1000_p_scaffold_234_27
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27955..29430
DNA (1476bp) protein (492aa)
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003704358 rbh
Putative HTH-type transcriptional regulator YdcR {ECO:0000313|EMBL:EWS59363.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
GntR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_234_28
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29615..30499)
DNA (885bp) protein (295aa)
nucleoside-diphosphate sugar epimerase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395D665
NmrA family protein {ECO:0000313|EMBL:EED69535.1}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
NAD(P)-binding domain-containing protein
SCNpilot_cont_1000_p_scaffold_234_29
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30496..31587)
DNA (1092bp) protein (364aa)
dibenzothiophene desulfurization protein B (EC:3.13.1.3)
Uncharacterized protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WW53_COMTE rbh
Desulfurase {ECO:0000313|EMBL:KGH31791.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_cont_1000_p_scaffold_234_30
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31632..33260)
DNA (1629bp) protein (543aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036BDF7A rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGH31790.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
ABC transporter substrate binding subunit; K02035 peptide/nickel transport system substrate-binding protein
Displaying items 1-30 of 161 in total

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