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SCNpilot_cont_1000_p_scaffold_263

Search features with annotation key words

Displaying items 1-30 of 120 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_263_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..678
DNA (678bp) protein (226aa)
RNA polymerase sigma factor RpoD n=1 Tax=Variovorax paradoxus B4 RepID=T1X7P1_VARPD
rpoD; RNA polymerase sigma factor RpoD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_263_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

784..2019
DNA (1236bp) protein (412aa)
Drug resistance transporter, Bcr/CflA subfamily n=1 Tax=Variovorax sp. CF313 RepID=J2KBK4_9BURK rbh
Drug resistance transporter, Bcr/CflA subfamily {ECO:0000313|EMBL:EJL77615.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Bcr/CflA subfamily drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein rbh
SCNpilot_cont_1000_p_scaffold_263_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2039..3166
DNA (1128bp) protein (376aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000361AA93 rbh
CBS-domain-containing membrane protein {ECO:0000313|EMBL:EJL77614.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
CBS domain containing membrane protein; K07168 CBS domain-containing membrane protein rbh
SCNpilot_cont_1000_p_scaffold_263_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3290..4279)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KX84_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL77613.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_263_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4331..5536)
DNA (1206bp) protein (402aa)
Putative acyl-CoA transferase/carnitine dehydratase n=1 Tax=Variovorax sp. CF313 RepID=J2TGQ1_9BURK rbh
Putative acyl-CoA transferase/carnitine dehydratase {ECO:0000313|EMBL:EJL77612.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
L-carnitine dehydratase/bile acid-inducible protein f rbh
SCNpilot_cont_1000_p_scaffold_263_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5533..6480)
DNA (948bp) protein (316aa)
pyruvate carboxyltransferase; K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] rbh
Pyruvate carboxyltransferase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8R7_VARPE rbh
Pyruvate carboxyltransferase {ECO:0000313|EMBL:ADU36139.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_263_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6582..7484
DNA (903bp) protein (301aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KBK0_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL77610.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_1000_p_scaffold_263_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7629..8528
DNA (900bp) protein (300aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Variovorax sp. CF313 RepID=J3CSI4_9BURK rbh
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EJL77609.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
beta-lactamase domain-containing protein rbh
SCNpilot_cont_1000_p_scaffold_263_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8516..9256
DNA (741bp) protein (247aa)
protein-disulfide isomerase n=1 Tax=Variovorax paradoxus RepID=UPI000367C583 rbh
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33631.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
DsbA-like thioredoxin domain-containing protein rbh
SCNpilot_cont_1000_p_scaffold_263_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9264..9968)
DNA (705bp) protein (235aa)
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8R2_VARPE rbh
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein rbh
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33634.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_1000_p_scaffold_263_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9961..10722)
DNA (762bp) protein (254aa)
hemolysin III n=1 Tax=Variovorax paradoxus RepID=UPI00035FEC5F rbh
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL77606.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative branched-chain amino acid ABC transporter, ATP-binding protein rbh
SCNpilot_cont_1000_p_scaffold_263_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10719..11717)
DNA (999bp) protein (333aa)
ABC-type branched-chain amino acid transport system, permease component n=1 Tax=Variovorax sp. CF313 RepID=J2KBJ6_9BURK rbh
ABC-type branched-chain amino acid transport system, permease component {ECO:0000313|EMBL:EJL77605.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_1000_p_scaffold_263_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11718..12590)
DNA (873bp) protein (291aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Variovorax sp. CF313 RepID=J3CSI1_9BURK rbh
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJL77604.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ABC transporter, permease protein rbh
SCNpilot_cont_1000_p_scaffold_263_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12733..13905)
DNA (1173bp) protein (391aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J2KX75_9BURK rbh
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL77603.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_cont_1000_p_scaffold_263_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14072..15058)
DNA (987bp) protein (329aa)
oxidoreductase FAD-binding protein; K03863 vanillate monooxygenase [EC:1.14.13.82] rbh
diguanylate cyclase n=1 Tax=Variovorax paradoxus RepID=UPI00036DD1CE rbh
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33639.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_1000_p_scaffold_263_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15100..15882)
DNA (783bp) protein (261aa)
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036E5ABA rbh
GntR family transcriptional regulator; K11475 GntR family transcriptional regulator, vanillate catabolism transcriptional regulator rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADU36128.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_263_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15879..16997)
DNA (1119bp) protein (373aa)
rieske (2fe-2S) iron-sulfur domain; K03862 vanillate monooxygenase [EC:1.14.13.82] rbh
Rieske (2Fe-2S) iron-sulfur domain n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8Q5_VARPE rbh
Rieske (2Fe-2S) iron-sulfur domain {ECO:0000313|EMBL:ADU36127.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_263_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17144..18265
DNA (1122bp) protein (374aa)
methionine synthase vitamin-b12 independent; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] rbh
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00036C4507 rbh
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33642.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_1000_p_scaffold_263_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18294..18968
DNA (675bp) protein (225aa)
glutathione s-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18] rbh
Glutathione S-transferase n=1 Tax=Variovorax sp. CF313 RepID=J3CSZ9_9BURK rbh
Glutathione S-transferase {ECO:0000313|EMBL:EJL77601.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_263_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18994..20376
DNA (1383bp) protein (461aa)
phospholipase d/transphosphatidylase; K06131 cardiolipin synthase [EC:2.7.8.-] rbh
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase n=1 Tax=Variovorax sp. CF313 RepID=J2KBJ4_9BURK rbh
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase {ECO:0000313|EMBL:EJL77600.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_263_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20612..22339
DNA (1728bp) protein (576aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037A05AB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU38558.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_263_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22320..23453)
DNA (1134bp) protein (378aa)
glucokinase n=1 Tax=Variovorax paradoxus RepID=UPI0003764148 rbh
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33649.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_263_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23564..25090
DNA (1527bp) protein (509aa)
Periplasmic glycine betaine/choline-binding lipoprotein of an ABC-type transport system n=1 Tax=Variovorax sp. CF313 RepID=J2JLG4_9BURK rbh
Periplasmic glycine betaine/choline-binding lipoprotein of an ABC-type transport system {ECO:0000313|EMBL:EJL68725.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
glycine betaine ABC transporter substrate-binding protein; K05846 osmoprotectant transport system permease protein rbh
SCNpilot_cont_1000_p_scaffold_263_24
unknown

Not on your lists

25197..25928
DNA (732bp) protein (244aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_263_25
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26142..27548
DNA (1407bp) protein (469aa)
Hemagglutinin-related protein n=1 Tax=Ralstonia solanacearum SD54 RepID=V5AFS7_RALSL rbh
Uncharacterized protein {ECO:0000313|EMBL:BAP89619.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
surface antigen rbh
SCNpilot_cont_1000_p_scaffold_263_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27529..27831)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9N8_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU35086.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_263_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28316..29752)
DNA (1437bp) protein (479aa)
aldehyde dehydrogenase (EC:1.2.1.3) rbh
NAD-dependent aldehyde dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2T0H1_9BURK rbh
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJL71452.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_263_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29766..31124)
DNA (1359bp) protein (453aa)
gudD; glucarate dehydratase GudD (EC:4.2.1.40) rbh
Glucarate dehydratase GudD {ECO:0000313|EMBL:AGU48928.1}; EC=4.2.1.40 {ECO:0000313|EMBL:AGU48928.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Glucarate dehydratase GudD n=1 Tax=Variovorax paradoxus B4 RepID=T1X8Q2_VARPD rbh
SCNpilot_cont_1000_p_scaffold_263_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31127..32128)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V7U9_VARPE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU36112.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_263_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32167..33078)
DNA (912bp) protein (304aa)
kdgD; 5-dehydro-4-deoxyglucarate dehydratase KdgD (EC:4.2.1.41) rbh
Probable 5-dehydro-4-deoxyglucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; EC=4.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00694};; 5-keto-4-deoxy-glucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Probable 5-dehydro-4-deoxyglucarate dehydratase n=1 Tax=Variovorax paradoxus B4 RepID=T1X9S6_VARPD rbh
Displaying items 1-30 of 120 in total

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