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SCNpilot_cont_1000_p_scaffold_329

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_329_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1042)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2D7_VARPE
hypothetical protein
Variovorax paradoxus strain MEDvA23 contig_45, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29242.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_1000_p_scaffold_329_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1056..1544)
DNA (489bp) protein (163aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000375AD60 rbh
Variovorax paradoxus strain MEDvA23 contig_45, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29243.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_329_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1740..2150)
DNA (411bp) protein (137aa)
RNA recognition motif-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X588_VARPD
RNA recognition motif-containing protein
RNA recognition motif-containing protein {ECO:0000313|EMBL:AGU47514.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_329_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2331..2567)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2D4_VARPE
hypothetical protein; K09954 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU34565.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_329_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2588..2965)
DNA (378bp) protein (126aa)
Translation initiation factor SUI1, putative, prokaryotic n=1 Tax=Variovorax sp. CF313 RepID=J3CJ54_9BURK
Variovorax paradoxus strain MEDvA23 contig_45, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29245.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
translation initiation factor sui1; K03113 translation initiation factor 1
SCNpilot_cont_1000_p_scaffold_329_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3015..4298
DNA (1284bp) protein (428aa)
DNA/RNA helicase, superfamily II n=1 Tax=Variovorax sp. CF313 RepID=J2KHQ4_9BURK rbh
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:EJL72638.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
DEAD/DEAH box helicase domain-containing protein rbh
SCNpilot_cont_1000_p_scaffold_329_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4331..5089)
DNA (759bp) protein (253aa)
Membrane protease subunit, stomatin/prohibitin n=1 Tax=Variovorax sp. CF313 RepID=J2T3P8_9BURK rbh
Membrane protease subunit, stomatin/prohibitin {ECO:0000313|EMBL:EJL72637.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_329_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5164..6339)
DNA (1176bp) protein (392aa)
acyL-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] rbh
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2D0_VARPE rbh
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:ADU34561.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_329_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6347..7507)
DNA (1161bp) protein (387aa)
acyL-CoA dehydrogenase domain-containing protein; K11731 citronellyl-CoA dehydrogenase [EC:1.3.99.-] rbh
acyl-CoA dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00036486C1 rbh
Variovorax paradoxus strain MEDvA23 contig_45, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29250.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_1000_p_scaffold_329_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7534..8436)
DNA (903bp) protein (301aa)
2,4-dienoyl-CoA reductase n=1 Tax=Variovorax paradoxus RepID=UPI000361CAC1 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL72634.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
short-chain dehydrogenase/reductase sdr; K13774 citronellol/citronellal dehydrogenase rbh
SCNpilot_cont_1000_p_scaffold_329_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8483..10435)
DNA (1953bp) protein (651aa)
carbamoyL-phosphate synthase l chain ATP-binding protein; K13777 geranyl-CoA carboxylase alpha subunit [EC:6.4.1.5] rbh
Acetyl/propionyl-CoA carboxylase, alpha subunit n=1 Tax=Variovorax sp. CF313 RepID=J2KHP9_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_45, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29252.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_1000_p_scaffold_329_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10432..12042)
DNA (1611bp) protein (537aa)
methylcrotonoyL-CoA carboxylase (EC:6.4.1.4); K13778 geranyl-CoA carboxylase beta subunit [EC:6.4.1.5] rbh
Methylcrotonoyl-CoA carboxylase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2C6_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_45, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29253.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_1000_p_scaffold_329_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12139..12915)
DNA (777bp) protein (259aa)
histidine kinase n=1 Tax=Variovorax paradoxus RepID=UPI00036016D6 rbh
MHYT domain-containing protein {ECO:0000313|EMBL:EJL72631.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative signaling protein rbh
SCNpilot_cont_1000_p_scaffold_329_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13050..14765)
DNA (1716bp) protein (572aa)
SMP-30/Gluconolaconase/LRE-like region-containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2C4_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_45, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29255.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
smp-30/gluconolaconase/lre-like region-containing protein rbh
SCNpilot_cont_1000_p_scaffold_329_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14907..16130)
DNA (1224bp) protein (408aa)
Putative membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J3CJ49_9BURK rbh
Putative membrane protein {ECO:0000313|EMBL:EJL72629.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_329_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16162..17328)
DNA (1167bp) protein (389aa)
Acetylornithine deacetylase {ECO:0000256|SAAS:SAAS00063950}; EC=3.5.1.16 {ECO:0000256|SAAS:SAAS00063953};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
acetylornithine deacetylase ArgE; K01438 acetylornithine deacetylase [EC:3.5.1.16] rbh
Acetylornithine deacetylase ArgE n=1 Tax=Variovorax sp. CF313 RepID=J2KHP6_9BURK rbh
SCNpilot_cont_1000_p_scaffold_329_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17463..17993
DNA (531bp) protein (177aa)
h16_A2722; cytosine/adenosine deaminase (EC:3.5.4.-)
CMP deaminase n=1 Tax=Variovorax paradoxus RepID=UPI00037039F5 rbh
Cytosine/adenosine deaminase {ECO:0000313|EMBL:EJL72626.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_329_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18079..19281
DNA (1203bp) protein (401aa)
amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32] rbh
Amidohydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2JXM6_9BURK rbh
Amidohydrolase {ECO:0000313|EMBL:EJL72625.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_329_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19289..20383
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CJ47_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL72624.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_329_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20373..21503)
DNA (1131bp) protein (377aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J2KHP2_9BURK rbh
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL72623.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative branched-chain amino acid-binding protein rbh
SCNpilot_cont_1000_p_scaffold_329_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21555..23615
DNA (2061bp) protein (687aa)
Anaerobic dehydrogenase, typically selenocysteine-containing n=1 Tax=Variovorax sp. CF313 RepID=J2T3N3_9BURK rbh
Anaerobic dehydrogenase, typically selenocysteine-containing {ECO:0000313|EMBL:EJL72622.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
molybdopterin dinucleotide-binding protein rbh
SCNpilot_cont_1000_p_scaffold_329_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23612..24736
DNA (1125bp) protein (375aa)
Aminopeptidase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2E2_VARPE rbh
aminopeptidase rbh
Aminopeptidase {ECO:0000313|EMBL:ADU34573.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_329_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24729..25043
DNA (315bp) protein (105aa)
Polyhydroxyalkanoic acid system protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2E3_VARPE
Variovorax paradoxus strain MEDvA23 contig_45, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29262.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
polyhydroxyalkanoic acid system protein
SCNpilot_cont_1000_p_scaffold_329_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25056..26297
DNA (1242bp) protein (414aa)
Putative acyl-CoA transferase/carnitine dehydratase n=1 Tax=Variovorax sp. CF313 RepID=J3CJ44_9BURK rbh
Putative acyl-CoA transferase/carnitine dehydratase {ECO:0000313|EMBL:EJL72619.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
CoA-transferase, family 3 rbh
SCNpilot_cont_1000_p_scaffold_329_25
Pseudomonas sp. GM21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26365..28026
DNA (1662bp) protein (554aa)
aprE; peptidase S8/S53 subtilisin kexin sedolisin (EC:3.4.21.62)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000368D4E2 rbh
Subtilisin-like serine protease {ECO:0000313|EMBL:EJM24660.1}; TaxID=1144325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM21.;"
SCNpilot_cont_1000_p_scaffold_329_26
Pseudomonas sp. GM21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28023..28274
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037393EB
Uncharacterized protein {ECO:0000313|EMBL:EJM24661.1}; TaxID=1144325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM21.;"
SCNpilot_cont_1000_p_scaffold_329_27
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

28333..29247
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037F761E rbh
DNA/RNA non-specific endonuclease; K01173 endonuclease G, mitochondrial
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
SCNpilot_cont_1000_p_scaffold_329_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29259..29516)
DNA (258bp) protein (86aa)
Acyl-CoA-binding protein n=1 Tax=Variovorax sp. CF313 RepID=J2KHN7_9BURK
Acyl-CoA-binding protein {ECO:0000313|EMBL:EJL72618.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
acyL-CoA-binding protein acbp
SCNpilot_cont_1000_p_scaffold_329_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29597..30439)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2F4_VARPE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU34585.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_329_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30446..31171)
DNA (726bp) protein (242aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J3CJB4_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL72616.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, TetR family rbh
Displaying items 1-30 of 78 in total

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