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SCNpilot_cont_1000_p_scaffold_376

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Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_376_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

353..1945
DNA (1593bp) protein (531aa)
PGAP1-like protein n=1 Tax=Variovorax sp. CF313 RepID=J3CIW7_9BURK rbh
PGAP1-like protein {ECO:0000313|EMBL:EJL72361.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_376_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1968..2504
DNA (537bp) protein (179aa)
isochorismatase n=1 Tax=Variovorax paradoxus RepID=UPI00036B0B5D rbh
Nicotinamidase-like amidase {ECO:0000313|EMBL:EJL72360.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
isochorismatase family protein rbh
SCNpilot_cont_1000_p_scaffold_376_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2518..3588)
DNA (1071bp) protein (357aa)
Alpha/beta superfamily hydrolase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQZ6_SINAD rbh
alpha/beta fold family hydrolase rbh
Alpha/beta superfamily hydrolase {ECO:0000313|EMBL:AGA30836.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCNpilot_cont_1000_p_scaffold_376_4
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3640..4473)
DNA (834bp) protein (278aa)
carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] rbh
Carboxymuconolactone decarboxylase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y2R8_LEPCP rbh
Cupin {ECO:0000313|EMBL:EYS84936.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
SCNpilot_cont_1000_p_scaffold_376_5
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4602..5558
DNA (957bp) protein (319aa)
Transcription regulator protein, lysr family n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KPW3_9BURK rbh
Transcription regulator protein, lysr family {ECO:0000313|EMBL:EGI78131.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
probable transcription regulator protein
SCNpilot_cont_1000_p_scaffold_376_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5684..6355
DNA (672bp) protein (224aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UUY6_VARPE rbh
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein rbh
Variovorax paradoxus strain MEDvA23 contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31699.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_1000_p_scaffold_376_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6384..7037
DNA (654bp) protein (218aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Variovorax sp. CF313 RepID=J2T2V3_9BURK rbh
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJL72357.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative amino acid ABC transporter, permease protein rbh
SCNpilot_cont_1000_p_scaffold_376_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7097..7894
DNA (798bp) protein (266aa)
Extracellular solute-binding protein family 3 n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UUY8_VARPE rbh
family 3 extracellular solute-binding protein; K02030 polar amino acid transport system substrate-binding protein rbh
Variovorax paradoxus strain MEDvA23 contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31697.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_1000_p_scaffold_376_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7931..8686
DNA (756bp) protein (252aa)
ABC transporter; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21] rbh
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UUY9_VARPE rbh
ABC transporter related protein {ECO:0000313|EMBL:ADU36404.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_376_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8686..9435
DNA (750bp) protein (250aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UUZ0_VARPE rbh
xylose isomerase domain-containing protein rbh
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:ADU36405.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_376_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9455..10408
DNA (954bp) protein (318aa)
PfkB domain-containing protein; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] rbh
Sugar kinase, ribokinase n=1 Tax=Variovorax sp. CF313 RepID=J3CC74_9BURK rbh
Sugar kinase, ribokinase {ECO:0000313|EMBL:EJL68669.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_376_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10414..11397
DNA (984bp) protein (328aa)
Variovorax paradoxus strain MEDvA23 contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31693.1}; EC=1.1.1.79 {ECO:0000313|EMBL:KIQ31693.1};; EC=1.1.1.81 {ECO:0000313|EMBL:KIQ31693.1};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; K00090 gluconate 2-dehydrogenase [EC:1.1.1.215] rbh
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Variovorax sp. CF313 RepID=J2K624_9BURK rbh
SCNpilot_cont_1000_p_scaffold_376_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11522..12547
DNA (1026bp) protein (342aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2SSX3_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL68667.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LacI family transcriptional regulator; K02525 LacI family transcriptional regulator, kdg operon repressor rbh
SCNpilot_cont_1000_p_scaffold_376_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12447..14180)
DNA (1734bp) protein (578aa)
choline dehydrogenase (EC:1.1.99.1); K00119 [EC:1.1.99.-] rbh
Choline dehydrogenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UUZ4_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_46, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29000.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_1000_p_scaffold_376_15
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14455..15975
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IG60_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:ERF81474.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
beta-lactamase rbh
SCNpilot_cont_1000_p_scaffold_376_16
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16007..16654
DNA (648bp) protein (216aa)
DNA-binding response regulator, LuxR family n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SW03_JANMA
citB1; LuxR family transcriptional regulator
DNA-binding response regulator, LuxR family {ECO:0000313|EMBL:ABR89974.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
SCNpilot_cont_1000_p_scaffold_376_17
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16763..17323
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EKM9_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_cont_1000_p_scaffold_376_18
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17460..17828
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q3C7_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX47829.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_cont_1000_p_scaffold_376_19
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17857..19650)
DNA (1794bp) protein (598aa)
His Kinase A phosphoacceptor domain-containing protein 1 (EC:2.7.13.3) rbh
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XII4_9BURK rbh
Histidine kinase {ECO:0000313|EMBL:KGY27349.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
SCNpilot_cont_1000_p_scaffold_376_20
unknown

Not on your lists

comp(19725..20267)
DNA (543bp) protein (181aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_376_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21350..23215)
DNA (1866bp) protein (622aa)
LysM domain-containing protein n=1 Tax=Variovorax sp. CF313 RepID=J3CFW8_9BURK rbh
LysM domain-containing protein {ECO:0000313|EMBL:EJL70561.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative LysM domain-containing protein
SCNpilot_cont_1000_p_scaffold_376_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23234..25984)
DNA (2751bp) protein (917aa)
Rhs element Vgr protein n=1 Tax=Variovorax sp. CF313 RepID=J2JRZ1_9BURK rbh
Rhs element Vgr protein {ECO:0000313|EMBL:EJL70560.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type VI secretion system, Vgr family protein
SCNpilot_cont_1000_p_scaffold_376_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26485..27516
DNA (1032bp) protein (344aa)
Putative ABC transporter, substrate-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XCH1_VARPD rbh
putative ABC transporter, substrate-binding protein rbh
Putative ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGU50602.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_376_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27523..28317
DNA (795bp) protein (265aa)
ABC transporter, ATP-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XDR0_VARPD rbh
ABC transporter, ATP-binding protein rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGU50601.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_376_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28328..29191
DNA (864bp) protein (288aa)
ABC transporter, permease protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XET0_VARPD rbh
ABC transporter, permease protein rbh
ABC transporter, permease protein {ECO:0000313|EMBL:AGU50600.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_376_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29257..30639
DNA (1383bp) protein (461aa)
FAD-dependent oxidoreductase n=1 Tax=Variovorax paradoxus B4 RepID=T1XE71_VARPD rbh
FAD-dependent oxidoreductase rbh
FAD-dependent oxidoreductase {ECO:0000313|EMBL:AGU50599.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_376_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30636..31805
DNA (1170bp) protein (390aa)
CoA transferase n=1 Tax=Variovorax paradoxus RepID=UPI0003743718 rbh
CoA-transferase, family 3 rbh
CoA-transferase, family 3 {ECO:0000313|EMBL:AGU50598.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_376_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31802..32578
DNA (777bp) protein (259aa)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XCG6_VARPD rbh
enoyl-CoA hydratase/isomerase family protein rbh
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:AGU50597.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_376_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32607..32942
DNA (336bp) protein (112aa)
ferredoxin n=1 Tax=Variovorax paradoxus RepID=UPI000382B49D
putative ferredoxin
Putative ferredoxin {ECO:0000313|EMBL:AGU50596.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_376_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32970..33884
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XES5_VARPD rbh
transcriptional regulator, LysR family rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU50595.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Displaying items 1-30 of 68 in total

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