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SCNpilot_cont_1000_p_scaffold_461

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Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_461_1
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(191..2137)
DNA (1947bp) protein (649aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS62036.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
Putative uncharacterized protein id=4815978 bin=GWA2_Elusi_like_61_42 species=Burkholderia pseudomallei genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi rbh
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_461_2
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2134..2649)
DNA (516bp) protein (172aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS62035.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
Uncharacterized protein id=4815977 bin=GWA2_Elusi_like_61_42 species=Methanobacterium formicicum genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi
hypothetical protein
SCNpilot_cont_1000_p_scaffold_461_3
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2646..3860)
DNA (1215bp) protein (405aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS56875.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
Putative uncharacterized protein id=4815976 bin=GWA2_Elusi_like_61_42 species=Xanthomonas campestris genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi rbh
hypothetical protein
SCNpilot_cont_1000_p_scaffold_461_4
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3883..4113)
DNA (231bp) protein (77aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
Putative helicase, superfamily I n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q7WXG7_CUPNH
uvrD; helicase superfamily protein I
SCNpilot_cont_1000_p_scaffold_461_5
unknown

Not on your lists

comp(4228..4518)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_461_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5227..5658)
DNA (432bp) protein (144aa)
lactoylglutathione lyase (EC:4.4.1.5); K01759 lactoylglutathione lyase [EC:4.4.1.5]
glyoxalase I n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037DDE64
Lactoylglutathione lyase {ECO:0000313|EMBL:GAD22043.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_cont_1000_p_scaffold_461_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5738..6418)
DNA (681bp) protein (227aa)
glutathione s-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18] rbh
Glutathione S-transferase n=1 Tax=Variovorax sp. CF313 RepID=J2KG94_9BURK rbh
Glutathione S-transferase {ECO:0000313|EMBL:EJL79210.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_461_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6520..7206)
DNA (687bp) protein (229aa)
ABC transporter; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30] rbh
ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI00035D6CF0 rbh
ABC transporter related protein {ECO:0000313|EMBL:ADU38446.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_461_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7203..8879)
DNA (1677bp) protein (559aa)
iron ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00037287F5 rbh
binding-protein-dependent transport systems inner membrane component; K02011 iron(III) transport system permease protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU38445.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_461_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9025..10086)
DNA (1062bp) protein (354aa)
iron ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00035C7101 rbh
putative ABC transporter, iron-binding protein rbh
Putative ABC transporter, iron-binding protein {ECO:0000313|EMBL:AGU50906.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_461_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10243..10791)
DNA (549bp) protein (183aa)
aromatic compound catabolic protein n=1 Tax=Variovorax paradoxus RepID=UPI00035EFEE2 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL79217.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
thioesterase superfamily protein rbh
SCNpilot_cont_1000_p_scaffold_461_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10867..11322
DNA (456bp) protein (152aa)
MarR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00035D77E5
Transcriptional regulator {ECO:0000313|EMBL:EJL79218.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
MarR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_461_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11431..12744
DNA (1314bp) protein (438aa)
Major facilitator superfamily MFS_1 n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V886_VARPE rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADU38438.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_461_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12767..14188
DNA (1422bp) protein (474aa)
Putative efflux protein, MATE family n=1 Tax=Variovorax sp. CF313 RepID=J2KGA3_9BURK rbh
Putative efflux protein, MATE family {ECO:0000313|EMBL:EJL79220.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
mate efflux family protein rbh
SCNpilot_cont_1000_p_scaffold_461_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14234..14944
DNA (711bp) protein (237aa)
short-chain dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00036B5339 rbh
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26841.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative oxidoreductase, SDR family rbh
SCNpilot_cont_1000_p_scaffold_461_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14957..15271)
DNA (315bp) protein (105aa)
signal peptide protein n=1 Tax=Variovorax paradoxus RepID=UPI0003680A3C
signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:ACS20309.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_461_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15422..16159)
DNA (738bp) protein (246aa)
Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase n=1 Tax=Variovorax sp. CF313 RepID=J2TKX6_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26843.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
class ii aldolase/adducin family protein rbh
SCNpilot_cont_1000_p_scaffold_461_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16198..16842)
DNA (645bp) protein (215aa)
kdpg and khg aldolase; K01631 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] rbh
2-keto-3-deoxy-6-phosphogluconate aldolase n=1 Tax=Variovorax sp. CF313 RepID=J2L1V3_9BURK rbh
2-keto-3-deoxy-6-phosphogluconate aldolase {ECO:0000313|EMBL:EJL79223.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_461_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16839..17750)
DNA (912bp) protein (304aa)
2-dehydro-3-deoxygalactonokinase n=1 Tax=Variovorax paradoxus RepID=UPI000370DBF4 rbh
2-keto-3-deoxy-galactonokinase {ECO:0000313|EMBL:EJL79224.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative 2-dehydro-3-deoxygalactonokinase rbh
SCNpilot_cont_1000_p_scaffold_461_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17751..19487)
DNA (1737bp) protein (579aa)
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] rbh
Dihydroxyacid dehydratase/phosphogluconate dehydratase n=1 Tax=Variovorax sp. CF313 RepID=J2KGA9_9BURK rbh
Dihydroxyacid dehydratase/phosphogluconate dehydratase {ECO:0000313|EMBL:EJL79225.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_461_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19638..20381
DNA (744bp) protein (248aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J3CVS0_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL79226.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative transcriptional regulator, GntR family rbh
SCNpilot_cont_1000_p_scaffold_461_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20489..21871
DNA (1383bp) protein (461aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003648D92 rbh
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EJL79227.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ABC transporter, substrate-binding protein rbh
SCNpilot_cont_1000_p_scaffold_461_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21909..22799
DNA (891bp) protein (297aa)
Permease component of ABC-type sugar transporter n=1 Tax=Variovorax sp. CF313 RepID=J2L1V9_9BURK rbh
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:EJL79228.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein rbh
SCNpilot_cont_1000_p_scaffold_461_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22796..23647
DNA (852bp) protein (284aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V876_VARPE rbh
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU38428.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_461_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23671..24741
DNA (1071bp) protein (357aa)
sugar ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003711EE3 rbh
ATPase component of ABC-type sugar transporter {ECO:0000313|EMBL:EJL79230.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ABC transporter; K02023 multiple sugar transport system ATP-binding protein rbh
SCNpilot_cont_1000_p_scaffold_461_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24755..25852)
DNA (1098bp) protein (366aa)
endonuclease n=1 Tax=Variovorax paradoxus RepID=UPI000365BBD0 rbh
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26848.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
endonuclease/exonuclease/phosphatase rbh
SCNpilot_cont_1000_p_scaffold_461_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25913..27718)
DNA (1806bp) protein (602aa)
ATP-dependent RNA helicase RhlE {ECO:0000256|HAMAP-Rule:MF_00968}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00968};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
DEAD/DEAH box helicase domain-containing protein; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] rbh
ATP-dependent RNA helicase RhlE n=1 Tax=Variovorax sp. CF313 RepID=J2TKY2_9BURK rbh
SCNpilot_cont_1000_p_scaffold_461_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28021..29682
DNA (1662bp) protein (554aa)
ABC transporter; K06020 sulfate-transporting ATPase [EC:3.6.3.25] rbh
ATP-binding cassette protein, ChvD family n=1 Tax=Variovorax sp. CF313 RepID=J2L1W3_9BURK rbh
ATP-binding cassette protein, ChvD family {ECO:0000313|EMBL:EJL79233.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_461_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29769..31556)
DNA (1788bp) protein (596aa)
para-aminobenzoate synthase, component I; K03342 para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] rbh
Aminodeoxychorismate synthase, component I n=1 Tax=Variovorax sp. CF313 RepID=J2KGB8_9BURK rbh
Aminodeoxychorismate synthase, component I {ECO:0000313|EMBL:EJL79235.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_461_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31546..32925)
DNA (1380bp) protein (460aa)
TRAP transporter solute receptor, TAXI family n=1 Tax=Variovorax sp. CF313 RepID=J3CVS7_9BURK rbh
TRAP transporter solute receptor, TAXI family {ECO:0000313|EMBL:EJL79236.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
trap transporter solute receptor, taxi family rbh
Displaying items 1-30 of 64 in total

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