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SCNpilot_cont_1000_p_scaffold_634

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_634_1
unknown

Not on your lists

comp(236..427)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_634_2
unknown

Not on your lists

comp(791..1228)
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_634_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2029..19674)
DNA (17646bp) protein (5882aa)
YD repeat protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYG0_VARPS rbh
YD repeat protein {ECO:0000313|EMBL:ACS18919.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_634_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20079..20507
DNA (429bp) protein (143aa)
Putative signal-transduction protein containing cAMP-binding and CBS domain containing protein n=1 Tax=Variovorax sp. CF313 RepID=J2K351_9BURK
Putative signal-transduction protein containing cAMP-binding and CBS domain containing protein {ECO:0000313|EMBL:EJL74580.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
signal transduction protein with cbs domains
SCNpilot_cont_1000_p_scaffold_634_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20625..20984
DNA (360bp) protein (120aa)
Sigma 54 modulation protein / S30EA ribosomal protein n=1 Tax=Variovorax sp. CF313 RepID=J3CMP8_9BURK
Sigma 54 modulation protein / S30EA ribosomal protein {ECO:0000313|EMBL:EJL74581.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ribosomal subunit interface protein
SCNpilot_cont_1000_p_scaffold_634_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20971..21459)
DNA (489bp) protein (163aa)
Putative transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2T934_9BURK
Putative transcriptional regulator {ECO:0000313|EMBL:EJL74582.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
MerR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_634_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21449..21871)
DNA (423bp) protein (141aa)
ketosteroid isomerase n=1 Tax=Variovorax paradoxus RepID=UPI000373E326
Ketosteroid isomerase-like protein {ECO:0000313|EMBL:EJL74583.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K06893
SCNpilot_cont_1000_p_scaffold_634_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21989..22918)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CMF0_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL74584.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_cont_1000_p_scaffold_634_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23051..23539)
DNA (489bp) protein (163aa)
Response regulator receiver protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V764_VARPE
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ADU38360.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_634_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23631..25136)
DNA (1506bp) protein (502aa)
Glutamate--cysteine ligase {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391};; Gamma-ECS {ECO:0000256|HAMAP-Rule:MF_00578}; Gamma-glutamylcysteine synthetase {ECO:0000256|HAMAP-Rule:MF_00578}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
glutamate/cysteine ligase; K01919 glutamate--cysteine ligase [EC:6.3.2.2] rbh
Glutamate--cysteine ligase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V765_VARPE rbh
SCNpilot_cont_1000_p_scaffold_634_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25359..25676)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2T936_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL74587.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
antibiotic biosynthesis monooxygenase
SCNpilot_cont_1000_p_scaffold_634_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25690..26352)
DNA (663bp) protein (221aa)
carboxylesterase (EC:3.1.1.1); K06999 phospholipase/carboxylesterase rbh
Carboxylesterase {ECO:0000313|EMBL:ACS20256.1}; EC=3.1.1.1 {ECO:0000313|EMBL:ACS20256.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Carboxylesterase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CTR8_VARPS rbh
SCNpilot_cont_1000_p_scaffold_634_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26468..26806
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V768_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU38364.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_634_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26822..27817)
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037C59B7 rbh
Variovorax paradoxus strain MEDvA23 contig_76, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23247.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_634_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27974..28474
DNA (501bp) protein (167aa)
Fe2+/Zn2+ uptake regulation protein n=1 Tax=Variovorax sp. CF313 RepID=J3CMF3_9BURK
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:EJL74589.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K03711 Fur family transcriptional regulator, ferric uptake regulator
SCNpilot_cont_1000_p_scaffold_634_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28488..29681)
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035CC6CA rbh
Putative GTPase, G3E family {ECO:0000313|EMBL:EJL74590.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
cobalamin synthesis protein p47k rbh
SCNpilot_cont_1000_p_scaffold_634_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29785..30498)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CMQ4_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL74591.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_634_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30629..31528)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2T940_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL74592.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
short-chain dehydrogenase/reductase sdr rbh
SCNpilot_cont_1000_p_scaffold_634_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31572..32504)
DNA (933bp) protein (311aa)
AraC family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003627839 rbh
Variovorax paradoxus strain MEDvA23 contig_76, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23240.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
AraC family transcriptional regulator rbh
SCNpilot_cont_1000_p_scaffold_634_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32533..33180
DNA (648bp) protein (216aa)
Glutathione S-transferase n=1 Tax=Variovorax sp. CF313 RepID=J2KNE0_9BURK rbh
Glutathione S-transferase {ECO:0000313|EMBL:EJL74593.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
glutathione s-transferase domain-containing protein rbh
SCNpilot_cont_1000_p_scaffold_634_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33181..34083)
DNA (903bp) protein (301aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V774_VARPE rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU38370.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_634_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34218..35540
DNA (1323bp) protein (441aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00036555E5 rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADU38371.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_634_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35581..36684
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V776_VARPE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU38372.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_634_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36794..37591)
DNA (798bp) protein (266aa)
Putative enoyl-CoA hydratase/isomerase n=1 Tax=Variovorax paradoxus B4 RepID=T1XEA9_VARPD rbh
putative enoyl-CoA hydratase/isomerase rbh
Putative enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AGU50846.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_634_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37613..37993)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035FB36F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS20261.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_634_26
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38096..38923)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J1ES37_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE54991.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
SCNpilot_cont_1000_p_scaffold_634_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38926..39198)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CMQ5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL74596.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_634_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39301..40497
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2T944_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL74597.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_634_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40527..40739
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KNE5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL74598.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_634_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40762..41670)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V782_VARPE rbh
hypothetical protein; K09781 hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU38378.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Displaying items 1-30 of 40 in total

View Taxonomy