ggKbase home page

SCNpilot_cont_1000_p_scaffold_686

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_686_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..128
DNA (126bp) protein (42aa)
NAD(P)(+) transhydrogenase (EC:1.6.1.2); K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2]
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Comamonas sp. 7D-2 RepID=M9V1X5_9BURK
SCNpilot_cont_1000_p_scaffold_686_2
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

236..538
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I788_9BURK
hypothetical protein
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_cont_1000_p_scaffold_686_3
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(559..1266)
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000371AF7C rbh
ribose import ATP-binding protein RbsA-like
ABC transporter family protein {ECO:0000313|EMBL:AIO68128.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia oklahomensis.;"
SCNpilot_cont_1000_p_scaffold_686_4
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1277..1984)
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036C5788 rbh
ABC transporter family protein {ECO:0000313|EMBL:AIO66843.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia oklahomensis.;"
ribose import ATP-binding protein RbsA-like
SCNpilot_cont_1000_p_scaffold_686_5
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1981..3054)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037CC77E rbh
Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:KGR99342.1}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei ABCPW 111.;"
putative branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_1000_p_scaffold_686_6
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3051..3920)
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000374A57B rbh
ABC transporter, permease protein; K01997 branched-chain amino acid transport system permease protein rbh
ABC transporter, permease protein {ECO:0000313|EMBL:ABN83385.1}; TaxID=320373 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 668).;"
SCNpilot_cont_1000_p_scaffold_686_7
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3933..5201)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037F8080 rbh
branched-chain amino acid ABC transporter periplasmic amino acid-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative {ECO:0000313|EMBL:ABC37248.1}; Periplasmic binding domain protein {ECO:0000313|EMBL:AIP26296.1}; TaxID=271848 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 /; CIP 106301).;"
SCNpilot_cont_1000_p_scaffold_686_8
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5241..6743)
DNA (1503bp) protein (501aa)
phenylacetaldehyde dehydrogenase; K00146 phenylacetaldehyde dehydrogenase [EC:1.2.1.39] rbh
aldehyde dehydrogenase n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A7BD2 rbh
Aldehyde dehydrogenase family protein {ECO:0000313|EMBL:AIO65105.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia oklahomensis.;"
SCNpilot_cont_1000_p_scaffold_686_9
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6790..7179)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003766ED2
Uncharacterized protein {ECO:0000313|EMBL:KGR99301.1}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei ABCPW 111.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_686_10
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7221..8027)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A7BD4 rbh
Molybdenum cofactor biosynthesis F family protein {ECO:0000313|EMBL:AIO65547.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia oklahomensis.;"
molybdenum cofactor biosynthesis F family protein rbh
SCNpilot_cont_1000_p_scaffold_686_11
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8038..8847)
DNA (810bp) protein (270aa)
3-oxoacyl-ACP reductase n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A7BD5 rbh
Short chain dehydrogenase family protein {ECO:0000313|EMBL:AIO67087.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia oklahomensis.;"
short chain dehydrogenase/reductase family oxidoreductase rbh
SCNpilot_cont_1000_p_scaffold_686_12
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8924..10525)
DNA (1602bp) protein (534aa)
GMC family oxidoreductase n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A7BD6 rbh
Alcohol dehydrogenase acceptor {ECO:0000313|EMBL:AIO67499.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia oklahomensis.;"
alkJ; alcohol dehydrogenase [acceptor] rbh
SCNpilot_cont_1000_p_scaffold_686_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10555..11775
DNA (1221bp) protein (407aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37] rbh
Uroporphyrinogen decarboxylase n=1 Tax=Variovorax sp. CF313 RepID=J2SQL5_9BURK rbh
SCNpilot_cont_1000_p_scaffold_686_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12145..14325
DNA (2181bp) protein (727aa)
primosomal protein n'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] rbh
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Primosomal protein N n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8I0_VARPE rbh
SCNpilot_cont_1000_p_scaffold_686_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14375..15286
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8H9_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29635.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_686_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15304..15525)
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D6A37
Uncharacterized protein {ECO:0000313|EMBL:EJL67835.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_686_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15753..16472
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CAU5_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL67834.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_686_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16487..17512)
DNA (1026bp) protein (342aa)
Auxin Efflux Carrier n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8H6_VARPE rbh
auxin efflux carrier; K07088 rbh
Auxin Efflux Carrier {ECO:0000313|EMBL:ADU34959.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_686_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17658..19760
DNA (2103bp) protein (701aa)
ATP-dependent DNA helicase Rep {ECO:0000256|HAMAP-Rule:MF_01920}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01920, ECO:0000256|SAAS:SAAS00145970};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
UvrD/REP helicase; K03656 ATP-dependent DNA helicase Rep [EC:3.6.4.12] rbh
DNA/RNA helicase, superfamily I n=1 Tax=Variovorax sp. CF313 RepID=J2K3J3_9BURK rbh
SCNpilot_cont_1000_p_scaffold_686_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19757..20236
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000369BA9C
Uncharacterized protein {ECO:0000313|EMBL:EJL67832.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_686_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20233..21399
DNA (1167bp) protein (389aa)
phospholipase a(1) (EC:3.1.1.32); K01058 phospholipase A1 [EC:3.1.1.32] rbh
phospholipase n=1 Tax=Variovorax paradoxus RepID=UPI000378BA70 rbh
Outer membrane phospholipase A {ECO:0000313|EMBL:EJL67831.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_686_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21425..22282
DNA (858bp) protein (286aa)
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
NAD+ synthetase; K01916 NAD+ synthase [EC:6.3.1.5] rbh
NAD synthetase n=1 Tax=Variovorax paradoxus RepID=UPI000372435B rbh
SCNpilot_cont_1000_p_scaffold_686_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22370..23089
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000360FF38
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU50432.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_686_24
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23091..25745
DNA (2655bp) protein (885aa)
Uncharacterized protein n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T7V6_BURPP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACD18858.1}; Flags: Precursor;; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
SCNpilot_cont_1000_p_scaffold_686_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25745..26404
DNA (660bp) protein (220aa)
Flagellar motor protein n=1 Tax=Variovorax sp. CF313 RepID=J2SXP1_9BURK rbh
Flagellar motor protein {ECO:0000313|EMBL:EJL70412.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_686_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26418..27077
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037B7D19
Uncharacterized protein {ECO:0000313|EMBL:EJL70411.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_686_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27225..28625
DNA (1401bp) protein (467aa)
aldehyde dehydrogenase; K00154 coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] rbh
Aldehyde dehydrogenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UX43_VARPE rbh
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_686_28
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28647..29915)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036671F8
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEA62533.1}; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (strain BSR3).;"
SCNpilot_cont_1000_p_scaffold_686_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29923..31179)
DNA (1257bp) protein (419aa)
HlyD family secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI0003815534
HlyD family type I secretion membrane fusion protein; K12542 membrane fusion protein LapC rbh
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:ADU39197.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_686_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31166..33292)
DNA (2127bp) protein (709aa)
ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00037EAFB5
Type I secretion system ATPase {ECO:0000313|EMBL:ADU39198.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
type I secretion system ATPase; K12541 ATP-binding cassette, subfamily C, bacterial LapB rbh
Displaying items 1-30 of 60 in total

View Taxonomy