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SCNpilot_cont_1000_p_scaffold_754

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_754_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..470
DNA (468bp) protein (156aa)
transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003818C65
outer membrane autotransporter barrel domain-containing protein
Outer membrane autotransporter barrel domain-containing protein {ECO:0000313|EMBL:AGU49808.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_754_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(498..1532)
DNA (1035bp) protein (345aa)
Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVX9_VARPE rbh
AraC family transcriptional regulator rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADU36457.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_754_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1673..3232
DNA (1560bp) protein (520aa)
AMP-dependent synthetase and ligase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVY0_VARPE rbh
AMP-dependent synthetase and ligase rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADU36458.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_754_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3280..4464
DNA (1185bp) protein (395aa)
lipid-transfer protein n=1 Tax=Variovorax paradoxus RepID=UPI00036C88A3 rbh
Variovorax paradoxus strain MEDvA23 contig_132, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16736.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
thiolase rbh
SCNpilot_cont_1000_p_scaffold_754_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4478..4918
DNA (441bp) protein (147aa)
acyl dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI000372BE3A
maoc-like dehydratase
MaoC-like dehydratase {ECO:0000313|EMBL:ADU36460.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_754_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4933..5352
DNA (420bp) protein (140aa)
MaoC family dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI00035D7A39
maoc domain-containing protein dehydratase
MaoC domain protein dehydratase {ECO:0000313|EMBL:ADU36461.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_754_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5387..6217
DNA (831bp) protein (277aa)
short-chain dehydrogenase/reductase sdr; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
Short-chain dehydrogenase/reductase SDR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVY4_VARPE rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU36462.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_754_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6280..7068
DNA (789bp) protein (263aa)
enoyl-CoA hydratase n=1 Tax=Variovorax paradoxus RepID=UPI000364E008 rbh
enoyL-CoA hydratase/isomerase rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ADU36463.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_754_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7055..7906)
DNA (852bp) protein (284aa)
Putative extracellular solute-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XJZ5_VARPD rbh
Variovorax paradoxus strain MEDvA23 contig_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34630.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative extracellular solute-binding protein rbh
SCNpilot_cont_1000_p_scaffold_754_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7938..8624)
DNA (687bp) protein (229aa)
PKHD-type hydroxylase PMI12_00569 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ybiX; Fe(II)-dependent oxygenase superfamily protein; K07336 PKHD-type hydroxylase [EC:1.14.11.-] rbh
PKHD-type hydroxylase PMI12_00569 n=1 Tax=Variovorax sp. CF313 RepID=J3CWD0_9BURK rbh
SCNpilot_cont_1000_p_scaffold_754_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8653..10947)
DNA (2295bp) protein (765aa)
TonB-dependent siderophore receptor n=1 Tax=Variovorax sp. CF313 RepID=J2TLY7_9BURK rbh
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EJL79577.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
rubA; rubredoxin RubA; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_cont_1000_p_scaffold_754_12
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11221..12345
DNA (1125bp) protein (375aa)
hypothetical protein; K03924 MoxR-like ATPase [EC:3.6.3.-] rbh
ATPase AAA n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3H386_PSEAC rbh
ATPase AAA {ECO:0000313|EMBL:EQM66522.1}; TaxID=1333854 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
SCNpilot_cont_1000_p_scaffold_754_13
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12342..12794
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RVN6_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EPX96353.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_754_14
Pseudomonas batumici, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12791..14653
DNA (1863bp) protein (621aa)
hypothetical protein n=1 Tax=Pseudomonas fuscovaginae RepID=UPI0002F3C332 rbh
Uncharacterized protein {ECO:0000313|EMBL:KIH83594.1}; TaxID=226910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas batumici.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_754_15
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14637..17597
DNA (2961bp) protein (987aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. AU12-08 RepID=S9T259_9RALS rbh
Uncharacterized protein {ECO:0000313|EMBL:EPX96355.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_754_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17610..18032)
DNA (423bp) protein (141aa)
Cupin domain-containing protein n=1 Tax=Variovorax sp. CF313 RepID=J2L2Z4_9BURK
Cupin 2 barrel domain-containing protein
Cupin domain-containing protein {ECO:0000313|EMBL:EJL79578.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_754_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18103..19056)
DNA (954bp) protein (318aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
proline iminopeptidase (EC:3.4.11.5); K01259 proline iminopeptidase [EC:3.4.11.5] rbh
Proline iminopeptidase n=1 Tax=Variovorax sp. CF313 RepID=J3CVY4_9BURK rbh
SCNpilot_cont_1000_p_scaffold_754_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19206..19751
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000364C02D
Variovorax paradoxus strain MEDvA23 contig_49, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ28243.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_754_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19801..20034)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CS28_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS19979.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_754_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20131..20595
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KHD4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79580.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
activator of hsp90 ATPase 1 family protein
SCNpilot_cont_1000_p_scaffold_754_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20697..21779
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GGF7_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85111.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_cont_1000_p_scaffold_754_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21848..22033
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CWD3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79581.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_754_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22067..23176
DNA (1110bp) protein (370aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] rbh
Chorismate synthase n=1 Tax=Variovorax sp. CF313 RepID=J2TLZ2_9BURK rbh
SCNpilot_cont_1000_p_scaffold_754_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23176..24369
DNA (1194bp) protein (398aa)
Arabinose efflux permease family protein n=1 Tax=Variovorax sp. CF313 RepID=J2L2Z9_9BURK rbh
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJL79583.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative transporter, MFS-type rbh
SCNpilot_cont_1000_p_scaffold_754_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24461..26641
DNA (2181bp) protein (727aa)
Metallophosphoesterase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V230_VARPE rbh
Metallophosphoesterase {ECO:0000313|EMBL:ADU39109.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
metallophosphoesterase rbh
SCNpilot_cont_1000_p_scaffold_754_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26798..28156)
DNA (1359bp) protein (453aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CS23_VARPS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACS19974.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_754_27
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(28301..29920)
DNA (1620bp) protein (540aa)
asdA; l-aspartate-beta-decarboxylase (EC:4.1.1.12); K09758 aspartate 4-decarboxylase [EC:4.1.1.12] rbh
L-aspartate-beta-decarboxylase n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AG90_COLFT rbh
LSU ribosomal protein L4p (L1e) {ECO:0000313|EMBL:AIY39283.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
SCNpilot_cont_1000_p_scaffold_754_28
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29982..31670)
DNA (1689bp) protein (563aa)
Putative transport protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AG89_COLFT rbh
putative transport protein rbh
Putative transport protein {ECO:0000313|EMBL:AEK59980.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
SCNpilot_cont_1000_p_scaffold_754_29
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31709..33397)
DNA (1689bp) protein (563aa)
Alanine/aspartate exchanger, AAE family n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SWX5_JANMA rbh
Alanine/aspartate exchanger, AAE family {ECO:0000313|EMBL:EZP35750.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
alanine/aspartate exchanger rbh
SCNpilot_cont_1000_p_scaffold_754_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33676..36642
DNA (2967bp) protein (989aa)
type VI secretion protein Vgr n=1 Tax=Variovorax paradoxus RepID=UPI000369538D rbh
Rhs element Vgr protein {ECO:0000313|EMBL:EJL79585.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type VI secretion system, Vgr family protein rbh
Displaying items 1-30 of 31 in total

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