name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_cont_1000_p_scaffold_975_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
471..923
|
Phage integrase family protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XHZ4_VARPD
phage integrase family protein
Phage integrase family protein {ECO:0000313|EMBL:AGU51760.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_1000_p_scaffold_975_2
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
966..1433
|
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y9V4_SORCE
Uncharacterized protein {ECO:0000313|EMBL:KFL35704.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
hypothetical protein
|
|
SCNpilot_cont_1000_p_scaffold_975_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1645..2523)
|
endonuclease n=1 Tax=Variovorax paradoxus RepID=UPI000370798A
rbh
putative xylose isomerase
rbh
Putative xylose isomerase {ECO:0000313|EMBL:AGU49055.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_1000_p_scaffold_975_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2532..3719)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003715487
rbh
Variovorax paradoxus strain MEDvA23 contig_89, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21241.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_975_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3727..4902)
|
oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00036F8081
rbh
Variovorax paradoxus strain MEDvA23 contig_89, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21242.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
oxidoreductase domain-containing protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_975_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4957..6387)
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TDE9_9BURK
rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL76227.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_975_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6399..7178)
|
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V413_VARPE
rbh
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
rbh
ABC transporter related protein {ECO:0000313|EMBL:ADU38132.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_1000_p_scaffold_975_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7236..8237)
|
Putative sulfonate/nitrate transport system substrate-binding protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V412_VARPE
rbh
sulfonate/nitrate transport system substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
rbh
Putative sulfonate/nitrate transport system substrate-binding protein {ECO:0000313|EMBL:ADU38131.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_1000_p_scaffold_975_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8276..9049)
|
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI0003822021
rbh
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EJL76230.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_975_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9096..10088)
|
LacI family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036AC489
rbh
putative Bug-like extra cytoplasmic solute receptor, TTT family
rbh
Putative Bug-like extra cytoplasmic solute receptor, TTT family {ECO:0000313|EMBL:AGU49062.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_1000_p_scaffold_975_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10247..10921)
|
TetR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003809A2C
rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL76232.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
TetR family transcriptional regulator
rbh
|
|
SCNpilot_cont_1000_p_scaffold_975_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11016..12746
|
thiamine pyrophosphate central domain-containing protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
rbh
thiamine pyrophosphate protein n=1 Tax=Variovorax paradoxus RepID=UPI0003737067
rbh
Thiamine pyrophosphate central domain-containing protein {ECO:0000313|EMBL:ADU38127.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_1000_p_scaffold_975_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12706..13005)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036EE86A
Variovorax paradoxus strain MEDvA23 contig_89, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21250.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
|
|
SCNpilot_cont_1000_p_scaffold_975_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13127..13852
|
Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus B4 RepID=T1X9B3_VARPD
rbh
transcriptional regulator, AraC family
rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AGU49066.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_1000_p_scaffold_975_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13941..14396)
|
SWIB/MDM2 domain-containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V405_VARPE
swib/mdm2 domain-containing protein
SWIB/MDM2 domain-containing protein {ECO:0000313|EMBL:ADU38124.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_1000_p_scaffold_975_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14551..15441)
|
Putative permease, DMT superfamily n=1 Tax=Variovorax sp. CF313 RepID=J3CQ33_9BURK
rbh
Putative permease, DMT superfamily {ECO:0000313|EMBL:EJL76234.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative transporter, EamA-like family
rbh
|
|
SCNpilot_cont_1000_p_scaffold_975_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15513..15929
|
gamma-glutamyl cyclotransferase n=1 Tax=Variovorax paradoxus RepID=UPI000362EBA0
aig2 family protein
AIG2 family protein {ECO:0000313|EMBL:ADU38122.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_1000_p_scaffold_975_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16136..17467
|
Isocitrate lyase n=1 Tax=Variovorax sp. CF313 RepID=J3CQJ8_9BURK
rbh
Isocitrate lyase {ECO:0000313|EMBL:EJL76236.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_1000_p_scaffold_975_19
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17564..18526)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036B9470
rbh
HTH-type transcriptional regulator GlxA {ECO:0000313|EMBL:CDN55080.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
AraC family transcriptional regulator
rbh
|
|
SCNpilot_cont_1000_p_scaffold_975_20
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18642..18953
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035F962C
Uncharacterized protein {ECO:0000313|EMBL:CDF83817.1}; TaxID=1301098 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).;"
hypothetical protein
|
|
SCNpilot_cont_1000_p_scaffold_975_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19171..21078
|
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
Threonine--tRNA ligase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V401_VARPE
rbh
|
|
SCNpilot_cont_1000_p_scaffold_975_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21255..21800
|
translation initiation factor IF-3 n=1 Tax=Variovorax paradoxus RepID=UPI00035C2153
rbh
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
translation initiation factor if-3; K02520 translation initiation factor IF-3
rbh
|
|
SCNpilot_cont_1000_p_scaffold_975_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21952..22155
|
50S ribosomal protein L35 n=4 Tax=Variovorax RepID=RL35_VARPS
rpmI; 50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_1000_p_scaffold_975_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22180..22539
|
50S ribosomal protein L20 n=2 Tax=Variovorax paradoxus RepID=RL20_VARPS
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_1000_p_scaffold_975_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22652..23728
|
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
pheS; phenylalanyl-tRNA synthetase alpha subunit PheS (EC:6.1.1.20)
rbh
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Variovorax paradoxus B4 RepID=T1XAA6_VARPD
rbh
|
|
SCNpilot_cont_1000_p_scaffold_975_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23770..26211
|
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phenylalanyL-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
rbh
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Variovorax sp. CF313 RepID=J2TDG1_9BURK
rbh
|
|
SCNpilot_cont_1000_p_scaffold_975_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26211..26594
|
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000381AE24
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|SAAS:SAAS00062113}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha
|
|
SCNpilot_cont_1000_p_scaffold_975_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26667..27134
|
Regulatory protein MerR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3Z4_VARPE
Variovorax paradoxus strain MEDvA23 contig_89, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21261.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
MerR family transcriptional regulator
|
|
SCNpilot_cont_1000_p_scaffold_975_29
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27717..27962)
|
Uncharacterized protein n=1 Tax=Ralstonia pickettii (strain 12J) RepID=B2UAI3_RALPJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD27780.1}; TaxID=402626 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12J).;"
|
|
SCNpilot_cont_1000_p_scaffold_975_30
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27959..29230)
|
Conjugation TrbI family protein n=1 Tax=Ralstonia pickettii (strain 12J) RepID=B2UAI2_RALPJ
rbh
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
rbh
Conjugation TrbI family protein {ECO:0000313|EMBL:ACD27779.1}; TaxID=402626 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12J).;"
|