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SCNpilot_cont_1000_p_scaffold_975

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_975_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

471..923
DNA (453bp) protein (151aa)
Phage integrase family protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XHZ4_VARPD
phage integrase family protein
Phage integrase family protein {ECO:0000313|EMBL:AGU51760.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_975_2
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

966..1433
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y9V4_SORCE
Uncharacterized protein {ECO:0000313|EMBL:KFL35704.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_975_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1645..2523)
DNA (879bp) protein (293aa)
endonuclease n=1 Tax=Variovorax paradoxus RepID=UPI000370798A rbh
putative xylose isomerase rbh
Putative xylose isomerase {ECO:0000313|EMBL:AGU49055.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_975_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2532..3719)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003715487 rbh
Variovorax paradoxus strain MEDvA23 contig_89, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21241.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_975_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3727..4902)
DNA (1176bp) protein (392aa)
oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00036F8081 rbh
Variovorax paradoxus strain MEDvA23 contig_89, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21242.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
oxidoreductase domain-containing protein rbh
SCNpilot_cont_1000_p_scaffold_975_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4957..6387)
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TDE9_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL76227.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_975_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6399..7178)
DNA (780bp) protein (260aa)
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V413_VARPE rbh
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein rbh
ABC transporter related protein {ECO:0000313|EMBL:ADU38132.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_975_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7236..8237)
DNA (1002bp) protein (334aa)
Putative sulfonate/nitrate transport system substrate-binding protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V412_VARPE rbh
sulfonate/nitrate transport system substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein rbh
Putative sulfonate/nitrate transport system substrate-binding protein {ECO:0000313|EMBL:ADU38131.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_975_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8276..9049)
DNA (774bp) protein (258aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI0003822021 rbh
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EJL76230.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein rbh
SCNpilot_cont_1000_p_scaffold_975_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9096..10088)
DNA (993bp) protein (331aa)
LacI family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036AC489 rbh
putative Bug-like extra cytoplasmic solute receptor, TTT family rbh
Putative Bug-like extra cytoplasmic solute receptor, TTT family {ECO:0000313|EMBL:AGU49062.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_975_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10247..10921)
DNA (675bp) protein (225aa)
TetR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003809A2C rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL76232.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
TetR family transcriptional regulator rbh
SCNpilot_cont_1000_p_scaffold_975_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11016..12746
DNA (1731bp) protein (577aa)
thiamine pyrophosphate central domain-containing protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] rbh
thiamine pyrophosphate protein n=1 Tax=Variovorax paradoxus RepID=UPI0003737067 rbh
Thiamine pyrophosphate central domain-containing protein {ECO:0000313|EMBL:ADU38127.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_975_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12706..13005)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036EE86A
Variovorax paradoxus strain MEDvA23 contig_89, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21250.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_975_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13127..13852
DNA (726bp) protein (242aa)
Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus B4 RepID=T1X9B3_VARPD rbh
transcriptional regulator, AraC family rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AGU49066.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_975_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13941..14396)
DNA (456bp) protein (152aa)
SWIB/MDM2 domain-containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V405_VARPE
swib/mdm2 domain-containing protein
SWIB/MDM2 domain-containing protein {ECO:0000313|EMBL:ADU38124.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_975_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14551..15441)
DNA (891bp) protein (297aa)
Putative permease, DMT superfamily n=1 Tax=Variovorax sp. CF313 RepID=J3CQ33_9BURK rbh
Putative permease, DMT superfamily {ECO:0000313|EMBL:EJL76234.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative transporter, EamA-like family rbh
SCNpilot_cont_1000_p_scaffold_975_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15513..15929
DNA (417bp) protein (139aa)
gamma-glutamyl cyclotransferase n=1 Tax=Variovorax paradoxus RepID=UPI000362EBA0
aig2 family protein
AIG2 family protein {ECO:0000313|EMBL:ADU38122.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_975_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16136..17467
DNA (1332bp) protein (444aa)
isocitrate lyase; K01637 isocitrate lyase [EC:4.1.3.1] rbh
Isocitrate lyase n=1 Tax=Variovorax sp. CF313 RepID=J3CQJ8_9BURK rbh
Isocitrate lyase {ECO:0000313|EMBL:EJL76236.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_975_19
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17564..18526)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036B9470 rbh
HTH-type transcriptional regulator GlxA {ECO:0000313|EMBL:CDN55080.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
AraC family transcriptional regulator rbh
SCNpilot_cont_1000_p_scaffold_975_20
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18642..18953
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035F962C
Uncharacterized protein {ECO:0000313|EMBL:CDF83817.1}; TaxID=1301098 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_975_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19171..21078
DNA (1908bp) protein (636aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
threonyL-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] rbh
Threonine--tRNA ligase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V401_VARPE rbh
SCNpilot_cont_1000_p_scaffold_975_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21255..21800
DNA (546bp) protein (182aa)
translation initiation factor IF-3 n=1 Tax=Variovorax paradoxus RepID=UPI00035C2153 rbh
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
translation initiation factor if-3; K02520 translation initiation factor IF-3 rbh
SCNpilot_cont_1000_p_scaffold_975_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


21952..22155
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=4 Tax=Variovorax RepID=RL35_VARPS
rpmI; 50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_975_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22180..22539
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=2 Tax=Variovorax paradoxus RepID=RL20_VARPS
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_975_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22652..23728
DNA (1077bp) protein (359aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
pheS; phenylalanyl-tRNA synthetase alpha subunit PheS (EC:6.1.1.20) rbh
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Variovorax paradoxus B4 RepID=T1XAA6_VARPD rbh
SCNpilot_cont_1000_p_scaffold_975_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23770..26211
DNA (2442bp) protein (814aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phenylalanyL-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] rbh
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Variovorax sp. CF313 RepID=J2TDG1_9BURK rbh
SCNpilot_cont_1000_p_scaffold_975_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26211..26594
DNA (384bp) protein (128aa)
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000381AE24
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|SAAS:SAAS00062113}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha
SCNpilot_cont_1000_p_scaffold_975_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26667..27134
DNA (468bp) protein (156aa)
Regulatory protein MerR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3Z4_VARPE
Variovorax paradoxus strain MEDvA23 contig_89, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21261.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
MerR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_975_29
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27717..27962)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii (strain 12J) RepID=B2UAI3_RALPJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD27780.1}; TaxID=402626 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12J).;"
SCNpilot_cont_1000_p_scaffold_975_30
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27959..29230)
DNA (1272bp) protein (424aa)
Conjugation TrbI family protein n=1 Tax=Ralstonia pickettii (strain 12J) RepID=B2UAI2_RALPJ rbh
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10 rbh
Conjugation TrbI family protein {ECO:0000313|EMBL:ACD27779.1}; TaxID=402626 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12J).;"
Displaying items 1-30 of 35 in total

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