ggKbase home page

SCNpilot_cont_1000_p_scaffold_984

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_984_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..529)
DNA (528bp) protein (176aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V324_VARPE
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU39163.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_984_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(569..1651)
DNA (1083bp) protein (361aa)
tartrate dehydrogenase (EC:4.1.1.73); K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] rbh
tartrate dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00036AD9E2 rbh
Tartrate dehydrogenase {ECO:0000313|EMBL:EJL68980.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_984_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2002..3471
DNA (1470bp) protein (490aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
histidine kinase n=1 Tax=Variovorax paradoxus RepID=UPI00037370EB rbh
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_1000_p_scaffold_984_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3536..4360
DNA (825bp) protein (275aa)
Aldo/keto reductase, diketogulonate reductase n=1 Tax=Variovorax sp. CF313 RepID=J3CCQ2_9BURK rbh
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:EJL68979.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
aldo/keto reductase rbh
SCNpilot_cont_1000_p_scaffold_984_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4371..5861)
DNA (1491bp) protein (497aa)
Xanthine permease n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVQ2_VARPS rbh
xanthine permease; K03458 nucleobase:cation symporter-2, NCS2 family rbh
Xanthine permease {ECO:0000313|EMBL:ACS20555.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_984_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6013..6996)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000363FC1B rbh
NAD-dependent epimerase/dehydratase family protein rbh
NAD-dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:AGS23291.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_cont_1000_p_scaffold_984_7
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7063..8835)
DNA (1773bp) protein (591aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000380E137 rbh
diguanylate cyclase/phosphodiesterase
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_cont_1000_p_scaffold_984_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8962..9522)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036EC157 rbh
XRE family transcriptional regulator {ECO:0000313|EMBL:KEC74480.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_984_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9532..10296)
DNA (765bp) protein (255aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J3CCQ0_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL68974.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, GntR family rbh
SCNpilot_cont_1000_p_scaffold_984_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10311..11048)
DNA (738bp) protein (246aa)
hydantoin racemase (EC:5.1.99.5); K01797 [EC:5.1.99.-] rbh
Asp/Glu racemase n=1 Tax=Variovorax paradoxus RepID=UPI00037A9321 rbh
Hydantoin racemase {ECO:0000313|EMBL:EJL68973.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_1000_p_scaffold_984_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11080..12573)
DNA (1494bp) protein (498aa)
Cytosine/uracil/thiamine/allantoin permease n=1 Tax=Variovorax sp. CF313 RepID=J2STQ8_9BURK rbh
Cytosine/uracil/thiamine/allantoin permease {ECO:0000313|EMBL:EJL68972.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
cytosine/purines uracil thiamine allantoin permease; K03457 nucleobase:cation symporter-1, NCS1 family rbh
SCNpilot_cont_1000_p_scaffold_984_12
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12766..13509)
DNA (744bp) protein (248aa)
amino-acid transporter subunit ; ATP-binding component of ABC superfamily (EC:3.6.3.28); K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21] rbh
Amino-acid transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CBJ53290.1}; EC=3.6.3.28 {ECO:0000313|EMBL:CBJ53290.1};; TaxID=859656 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CFBP2957.;"
sulfate ABC transporter ATP-binding protein n=1 Tax=Ralstonia solanacearum RepID=UPI0003089B45 rbh
SCNpilot_cont_1000_p_scaffold_984_13
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13506..14294)
DNA (789bp) protein (263aa)
Putative amino acid transmembrane ABC transporter protein n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8NGT3_RALSL rbh
putative amino acid transmembrane ABC transporter protein rbh
Putative amino acid transmembrane ABC transporter protein {ECO:0000313|EMBL:CBJ40107.1}; TaxID=859655 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CMR15.;"
SCNpilot_cont_1000_p_scaffold_984_14
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14320..15084)
DNA (765bp) protein (255aa)
Glutamate/aspartate ABC transport protein high affinity periplasmic solute-binding protein n=2 Tax=Ralstonia solanacearum RepID=F6G8C8_RALS8 rbh
substrate-binding periplasmic (Pbp) abc transporter protein rbh
Putative substrate-binding periplasmic (Pbp) abc transporter protein {ECO:0000313|EMBL:CBJ53292.1}; TaxID=859656 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CFBP2957.;"
SCNpilot_cont_1000_p_scaffold_984_15
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15254..15676)
DNA (423bp) protein (141aa)
AsnC family transcriptional regulator n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036EF69C
AsnC family transcriptional regulator {ECO:0000313|EMBL:GAE48684.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
AsnC family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_984_16
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15817..16866
DNA (1050bp) protein (350aa)
RSp0483; ornithine cyclodeaminase (EC:4.3.1.12); K01750 ornithine cyclodeaminase [EC:4.3.1.12] rbh
Ornithine cyclodeaminase {ECO:0000313|EMBL:AGH86396.1}; EC=4.3.1.12 {ECO:0000313|EMBL:AGH86396.1};; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum FQY_4.;"
Ornithine cyclodeaminase n=3 Tax=Ralstonia solanacearum RepID=M4ULD9_RALSL rbh
SCNpilot_cont_1000_p_scaffold_984_17
Pseudomonas sp. GM55, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16893..17852
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM55 RepID=J3GTY0_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:EJM74952.1}; Flags: Precursor;; TaxID=1144333 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM55.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_984_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17909..18640)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037804E0 rbh
two component transcriptional regulator, winged helix family
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:AGU51780.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_984_19
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18700..20631
DNA (1932bp) protein (644aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000374241D rbh
ATPase domain-containing protein
SCNpilot_cont_1000_p_scaffold_984_20
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21012..22004
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036688FC
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACA95898.1}; TaxID=406425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia (strain MC0-3).;"
SCNpilot_cont_1000_p_scaffold_984_21
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22183..32313
DNA (10131bp) protein (3377aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003811C8F rbh
Uncharacterized protein {ECO:0000313|EMBL:KJK03110.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
outer membrane protein rbh
SCNpilot_cont_1000_p_scaffold_984_22
Trabulsiella guamensis, Trabulsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32325..32564
DNA (240bp) protein (80aa)
Putative hemagglutinin/hemolysin-related protein n=1 Tax=Ralstonia solanacearum SD54 RepID=V5ANV4_RALSL
RTX family T1SS secreted agglutinin {ECO:0000313|EMBL:KFB97717.1}; Flags: Fragment;; TaxID=1005994 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Trabulsiella.;" source="Trabulsiella guamensis ATCC 49490.;"
hemagglutinin/hemolysin-related protein (fragment)
SCNpilot_cont_1000_p_scaffold_984_23
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32594..34096
DNA (1503bp) protein (501aa)
hypothetical protein; K14266 FADH2 O2-dependent halogenase I [EC:1.14.14.7] rbh
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037531F1 rbh
Strain MEJ086 contig_96, whole genome shotgun sequence {ECO:0000313|EMBL:KIP90882.1}; TaxID=47880 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva.;"
SCNpilot_cont_1000_p_scaffold_984_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34082..34360)
DNA (279bp) protein (93aa)
Flagellar transcriptional regulator FlhD n=1 Tax=Variovorax paradoxus B4 RepID=T1XEN7_VARPD
putative flagellar transcriptional activator FlhD
Flagellar transcriptional regulator FlhD {ECO:0000256|HAMAP-Rule:MF_00725, ECO:0000256|SAAS:SAAS00011626}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_p_scaffold_984_25
Trabulsiella guamensis, Trabulsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34357..35637)
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036671F8 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC10046.1}; TaxID=1005994 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Trabulsiella.;" source="Trabulsiella guamensis ATCC 49490.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_984_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35647..36945)
DNA (1299bp) protein (433aa)
HlyD family secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI0003815534 rbh
HlyD family type I secretion membrane fusion protein; K12542 membrane fusion protein LapC
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:ADU39197.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_984_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36932..39049)
DNA (2118bp) protein (706aa)
ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00037EAFB5 rbh
type I secretion system ATPase; K12541 ATP-binding cassette, subfamily C, bacterial LapB
Type I secretion system ATPase {ECO:0000313|EMBL:ADU39198.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_984_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39046..40473)
DNA (1428bp) protein (476aa)
type I secretion protein TolC n=1 Tax=Variovorax paradoxus RepID=UPI00037F6561 rbh
TolC family type I secretion outer membrane protein; K12543 outer membrane protein LapE rbh
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:ADU39199.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_984_29
Acinetobacter oleivorans, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40544..41143)
DNA (600bp) protein (200aa)
hypothetical protein, partial n=1 Tax=Enterobacteriaceae bacterium LSJC7 RepID=UPI00036DBDF3
Type I secretion protein {ECO:0000313|EMBL:KHN66388.1}; Flags: Fragment;; TaxID=1148157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter oleivorans.;"
putative adhesin for cattle intestine colonization
Displaying 29 items

View Taxonomy