name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_cont_1000_p_scaffold_1035_1
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(54..2438)
|
PAS domain S-box n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQP3_9SPHN
rbh
PAS domain S-box {ECO:0000313|EMBL:EJL35389.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
multi-sensor hybrid histidine kinase
rbh
|
|
SCNpilot_cont_1000_p_scaffold_1035_2
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2549..3577)
|
UniRef90_B1FRN5 Putative uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FRN5_9BURK id=720492 bin=RAAC39 species=Burkholderia ambifaria genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RAAC39 organism_group=Ignavibacteria
Uncharacterized protein {ECO:0000313|EMBL:EWS60140.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
|
|
SCNpilot_cont_1000_p_scaffold_1035_3
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3651..4694
|
Penicillin-binding protein 2 n=1 Tax=Acidovorax sp. CF316 RepID=J0U276_9BURK
Penicillin-binding protein 2 {ECO:0000313|EMBL:EJE50257.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
peptidoglycan glycosyltransferase
|
|
SCNpilot_cont_1000_p_scaffold_1035_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4730..5215)
|
4-hydroxy-4-methyl-2-oxoglutarate aldolase {ECO:0000256|RuleBase:RU004338, ECO:0000256|SAAS:SAAS00063993}; Short=HMG aldolase {ECO:0000256|RuleBase:RU004338};; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004338};; EC=4.1.3.17 {ECO:0000256|RuleBase:RU004338, ECO:0000256|SAAS:SAAS00063993};; Oxaloacetate decarboxylase {ECO:0000256|RuleBase:RU004338}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
Regulator of ribonuclease activity A n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X4Z3_COMTE
menG; ribonuclease activity regulator protein RraA; K02553 regulator of ribonuclease activity A
|
|
SCNpilot_cont_1000_p_scaffold_1035_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5223..6209)
|
Uncharacterized protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X4Z4_COMTE
rbh
Uncharacterized protein {ECO:0000313|EMBL:EED68772.1}; Flags: Precursor;; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
hypothetical protein
rbh
|
|
SCNpilot_cont_1000_p_scaffold_1035_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6206..8212)
|
aconitate hydratase domain-containing protein; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
rbh
3-isopropylmalate dehydratase large subunit n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000371CEF8
rbh
3-isopropylmalate dehydratase large subunit {ECO:0000313|EMBL:GAD23258.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
|
|
SCNpilot_cont_1000_p_scaffold_1035_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8294..9217)
|
Transcriptional regulator, LysR family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GFA9_ALIDK
rbh
LysR family transcriptional regulator
rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEB82760.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
|
|
SCNpilot_cont_1000_p_scaffold_1035_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9278..10312)
|
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036E463A
rbh
LysR family transcriptional regulator
rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS18293.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_cont_1000_p_scaffold_1035_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10415..11401
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003646AA4
rbh
hypothetical protein
rbh
Uncharacterized protein {ECO:0000313|EMBL:ACS18292.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_cont_1000_p_scaffold_1035_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11416..13047
|
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:AGU53481.1}; EC=2.3.2.2 {ECO:0000313|EMBL:AGU53481.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
gamma-glutamyltranspeptidase (EC:2.3.2.2)
rbh
Gamma-glutamyltranspeptidase n=1 Tax=Variovorax paradoxus B4 RepID=T1XLQ9_VARPD
rbh
|
|
SCNpilot_cont_1000_p_scaffold_1035_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13147..13416
|
prevent-host-death protein n=1 Tax=Variovorax paradoxus RepID=UPI00035E1FA7
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:ADU38952.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_1000_p_scaffold_1035_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13424..13741
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036FD287
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU38951.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_1000_p_scaffold_1035_13
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13922..14710)
|
Short-chain dehydrogenase/reductase SDR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQI8_PARL1
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48309.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
short-chain dehydrogenase/reductase SDR
|
|
SCNpilot_cont_1000_p_scaffold_1035_14
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14760..15545)
|
Putative oxidoreductase, short-chain dehydrogenase/reductase n=1 Tax=Pseudomonas putida (strain DOT-T1E) RepID=I7C472_PSEPT
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48308.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
butA; oxidoreductase, short-chain dehydrogenase/reductase
|
|
SCNpilot_cont_1000_p_scaffold_1035_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15542..16714)
|
l-carnitine dehydratase/bile acid-inducible protein f; K01796 alpha-methylacyl-CoA racemase [EC:5.1.99.4]
rbh
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00037B7423
rbh
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48312.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
|
|
SCNpilot_cont_1000_p_scaffold_1035_16
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16877..17914
|
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XWK7_LEPCP
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48306.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
alcohol dehydrogenase
|
|
SCNpilot_cont_1000_p_scaffold_1035_17
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17939..18520
|
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E816_9SPHN
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48300.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
|
|
SCNpilot_cont_1000_p_scaffold_1035_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18560..19708)
|
alpha-methylacyl-CoA racemase (EC:5.1.99.4)
rbh
Alpha-methylacyl-CoA racemase id=2961502 bin=GWC2_Methylomirabilis_70_16 species=Streptomyces sp. e14 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
|
|
SCNpilot_cont_1000_p_scaffold_1035_19
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19743..21299)
|
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00037E1268
4-coumarate--CoA ligase {ECO:0000313|EMBL:KIF82802.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
amp-dependent synthetase and ligase
|
|
SCNpilot_cont_1000_p_scaffold_1035_20
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21322..22503)
|
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI000374BF76
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48305.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
|
|
SCNpilot_cont_1000_p_scaffold_1035_21
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22522..23217)
|
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI0003658D7F
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48304.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ABC transporter-like protein
|
|
SCNpilot_cont_1000_p_scaffold_1035_22
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23214..23912)
|
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00036849EE
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48303.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ABC transporter-like protein
|
|
SCNpilot_cont_1000_p_scaffold_1035_23
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
comp(23899..25014)
|
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00037CA0AA
Uncharacterized protein {ECO:0000313|EMBL:EWT07830.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
livM; branched-chain amino acid ABC transporter system, permease protein
|
|
SCNpilot_cont_1000_p_scaffold_1035_24
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25014..25886)
|
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00037B92E1
rbh
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48301.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
inner-membrane translocator
|
|
SCNpilot_cont_1000_p_scaffold_1035_25
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25929..26795)
|
MaoC-like dehydratase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TT16_TISMK
mfeB; MaoC-like dehydratase
MaoC-like dehydratase {ECO:0000313|EMBL:AFK55904.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
|
|
SCNpilot_cont_1000_p_scaffold_1035_26
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26971..27636)
|
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI000361B281
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48430.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
nitroreductase
|
|
SCNpilot_cont_1000_p_scaffold_1035_27
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27661..28713)
|
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI0003702DED
rbh
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48311.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
aminoglycoside phosphotransferase
|
|
SCNpilot_cont_1000_p_scaffold_1035_28
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28724..29971)
|
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00037E5C00
rbh
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48310.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
acyl-CoA dehydrogenase
|
|
SCNpilot_cont_1000_p_scaffold_1035_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
30269..31423
|
Acyl-CoA dehydrogenase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QXK3_9BURK
putative acyl-CoA dehydrogenase fadE25
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
|
|
SCNpilot_cont_1000_p_scaffold_1035_30
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
31432..32622
|
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z542_9BRAD
rbh
hypothetical protein
rbh
Uncharacterized protein {ECO:0000313|EMBL:BAM88142.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
|