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SCNpilot_cont_1000_p_scaffold_1035

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1035_1
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54..2438)
DNA (2385bp) protein (795aa)
PAS domain S-box n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQP3_9SPHN rbh
PAS domain S-box {ECO:0000313|EMBL:EJL35389.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
multi-sensor hybrid histidine kinase rbh
SCNpilot_cont_1000_p_scaffold_1035_2
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2549..3577)
DNA (1029bp) protein (343aa)
UniRef90_B1FRN5 Putative uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FRN5_9BURK id=720492 bin=RAAC39 species=Burkholderia ambifaria genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RAAC39 organism_group=Ignavibacteria
Uncharacterized protein {ECO:0000313|EMBL:EWS60140.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
SCNpilot_cont_1000_p_scaffold_1035_3
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3651..4694
DNA (1044bp) protein (348aa)
Penicillin-binding protein 2 n=1 Tax=Acidovorax sp. CF316 RepID=J0U276_9BURK
Penicillin-binding protein 2 {ECO:0000313|EMBL:EJE50257.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
peptidoglycan glycosyltransferase
SCNpilot_cont_1000_p_scaffold_1035_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4730..5215)
DNA (486bp) protein (162aa)
4-hydroxy-4-methyl-2-oxoglutarate aldolase {ECO:0000256|RuleBase:RU004338, ECO:0000256|SAAS:SAAS00063993}; Short=HMG aldolase {ECO:0000256|RuleBase:RU004338};; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004338};; EC=4.1.3.17 {ECO:0000256|RuleBase:RU004338, ECO:0000256|SAAS:SAAS00063993};; Oxaloacetate decarboxylase {ECO:0000256|RuleBase:RU004338}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
Regulator of ribonuclease activity A n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X4Z3_COMTE
menG; ribonuclease activity regulator protein RraA; K02553 regulator of ribonuclease activity A
SCNpilot_cont_1000_p_scaffold_1035_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5223..6209)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X4Z4_COMTE rbh
Uncharacterized protein {ECO:0000313|EMBL:EED68772.1}; Flags: Precursor;; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_1035_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6206..8212)
DNA (2007bp) protein (669aa)
aconitate hydratase domain-containing protein; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] rbh
3-isopropylmalate dehydratase large subunit n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000371CEF8 rbh
3-isopropylmalate dehydratase large subunit {ECO:0000313|EMBL:GAD23258.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_cont_1000_p_scaffold_1035_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8294..9217)
DNA (924bp) protein (308aa)
Transcriptional regulator, LysR family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GFA9_ALIDK rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEB82760.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_cont_1000_p_scaffold_1035_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9278..10312)
DNA (1035bp) protein (345aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036E463A rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS18293.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_1035_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10415..11401
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003646AA4 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACS18292.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_1035_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11416..13047
DNA (1632bp) protein (544aa)
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:AGU53481.1}; EC=2.3.2.2 {ECO:0000313|EMBL:AGU53481.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
gamma-glutamyltranspeptidase (EC:2.3.2.2) rbh
Gamma-glutamyltranspeptidase n=1 Tax=Variovorax paradoxus B4 RepID=T1XLQ9_VARPD rbh
SCNpilot_cont_1000_p_scaffold_1035_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13147..13416
DNA (270bp) protein (90aa)
prevent-host-death protein n=1 Tax=Variovorax paradoxus RepID=UPI00035E1FA7
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:ADU38952.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_1035_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13424..13741
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036FD287
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU38951.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_1035_13
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13922..14710)
DNA (789bp) protein (263aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQI8_PARL1
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48309.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_1000_p_scaffold_1035_14
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14760..15545)
DNA (786bp) protein (262aa)
Putative oxidoreductase, short-chain dehydrogenase/reductase n=1 Tax=Pseudomonas putida (strain DOT-T1E) RepID=I7C472_PSEPT
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48308.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
butA; oxidoreductase, short-chain dehydrogenase/reductase
SCNpilot_cont_1000_p_scaffold_1035_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15542..16714)
DNA (1173bp) protein (391aa)
l-carnitine dehydratase/bile acid-inducible protein f; K01796 alpha-methylacyl-CoA racemase [EC:5.1.99.4] rbh
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00037B7423 rbh
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48312.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_1000_p_scaffold_1035_16
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16877..17914
DNA (1038bp) protein (346aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XWK7_LEPCP
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48306.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
alcohol dehydrogenase
SCNpilot_cont_1000_p_scaffold_1035_17
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17939..18520
DNA (582bp) protein (194aa)
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E816_9SPHN
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48300.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_1000_p_scaffold_1035_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18560..19708)
DNA (1149bp) protein (383aa)
alpha-methylacyl-CoA racemase (EC:5.1.99.4) rbh
Alpha-methylacyl-CoA racemase id=2961502 bin=GWC2_Methylomirabilis_70_16 species=Streptomyces sp. e14 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_cont_1000_p_scaffold_1035_19
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19743..21299)
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00037E1268
4-coumarate--CoA ligase {ECO:0000313|EMBL:KIF82802.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
amp-dependent synthetase and ligase
SCNpilot_cont_1000_p_scaffold_1035_20
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21322..22503)
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI000374BF76
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48305.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_1000_p_scaffold_1035_21
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22522..23217)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI0003658D7F
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48304.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ABC transporter-like protein
SCNpilot_cont_1000_p_scaffold_1035_22
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23214..23912)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00036849EE
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48303.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ABC transporter-like protein
SCNpilot_cont_1000_p_scaffold_1035_23
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23899..25014)
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00037CA0AA
Uncharacterized protein {ECO:0000313|EMBL:EWT07830.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
livM; branched-chain amino acid ABC transporter system, permease protein
SCNpilot_cont_1000_p_scaffold_1035_24
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25014..25886)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00037B92E1 rbh
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48301.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
inner-membrane translocator
SCNpilot_cont_1000_p_scaffold_1035_25
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25929..26795)
DNA (867bp) protein (289aa)
MaoC-like dehydratase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TT16_TISMK
mfeB; MaoC-like dehydratase
MaoC-like dehydratase {ECO:0000313|EMBL:AFK55904.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_1000_p_scaffold_1035_26
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26971..27636)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI000361B281
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48430.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
nitroreductase
SCNpilot_cont_1000_p_scaffold_1035_27
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27661..28713)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI0003702DED rbh
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48311.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
aminoglycoside phosphotransferase
SCNpilot_cont_1000_p_scaffold_1035_28
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28724..29971)
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00037E5C00 rbh
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48310.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
acyl-CoA dehydrogenase
SCNpilot_cont_1000_p_scaffold_1035_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30269..31423
DNA (1155bp) protein (385aa)
Acyl-CoA dehydrogenase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QXK3_9BURK
putative acyl-CoA dehydrogenase fadE25
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_cont_1000_p_scaffold_1035_30
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31432..32622
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z542_9BRAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAM88142.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
Displaying items 1-30 of 32 in total

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