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SCNpilot_cont_1000_p_scaffold_1763

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1763_1
unknown

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comp(9..230)
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1763_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(241..744)
DNA (504bp) protein (168aa)
DTW domain containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V1X4_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34672.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
dtw domain containing protein rbh
SCNpilot_cont_1000_p_scaffold_1763_3
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1065..1547
DNA (483bp) protein (161aa)
elongation factor GreAB n=1 Tax=Acidovorax radicis RepID=UPI0002375BDD
transcription elongation factor grea/greb domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_cont_1000_p_scaffold_1763_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1761..2270)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9N6_VARPE rbh
hypothetical protein; K09983 hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU35084.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_1000_p_scaffold_1763_5
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2482..3165)
DNA (684bp) protein (228aa)
dimethyl sulfoxide reductase subunit C n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0003748B29
Uncharacterized protein {ECO:0000313|EMBL:AIO26127.1}; TaxID=983594 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia ATCC 25416.;"
ThiJ/PfpI family protein
SCNpilot_cont_1000_p_scaffold_1763_6
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3231..3683)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000375C672
MerR family transcriptional regulator {ECO:0000313|EMBL:KJU77753.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes.;"
MerR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_1763_7
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3700..4719
DNA (1020bp) protein (340aa)
NAD-dependent dehydratase n=1 Tax=Ralstonia sp. AU12-08 RepID=S9TB30_9RALS rbh
NAD-dependent dehydratase {ECO:0000313|EMBL:KHK49581.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
NAD-dependent epimerase/dehydratase rbh
SCNpilot_cont_1000_p_scaffold_1763_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5047..5982)
DNA (936bp) protein (312aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CW26_VARPS
LysR family transcriptional regulator; K13635 LysR family transcriptional regulator, cys regulon transcriptional activator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS16724.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_1763_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6177..7139)
DNA (963bp) protein (321aa)
Extracellular solute-binding protein family 3 n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CV98_VARPS rbh
Variovorax paradoxus strain MEDvA23 contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37192.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
family 3 extracellular solute-binding protein rbh
SCNpilot_cont_1000_p_scaffold_1763_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7132..7959)
DNA (828bp) protein (276aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00036E5E57 rbh
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACS18548.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_p_scaffold_1763_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7956..8783)
DNA (828bp) protein (276aa)
ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003808F06 rbh
Variovorax paradoxus strain MEDvA23 contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37194.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein rbh
SCNpilot_cont_1000_p_scaffold_1763_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8788..9879)
DNA (1092bp) protein (364aa)
myristoyl transferase n=1 Tax=Variovorax paradoxus RepID=UPI00037EA4E7 rbh
Variovorax paradoxus strain MEDvA23 contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37211.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
NMT1/THI5 like domain-containing protein rbh
SCNpilot_cont_1000_p_scaffold_1763_13
unknown

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9993..10112
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1763_14
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10206..11666
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000371481D rbh
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG19842.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_1763_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12234..13223)
DNA (990bp) protein (330aa)
Transcriptional regulator (Fragment) n=1 Tax=Acidovorax sp. CF316 RepID=J0UDD2_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22970.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_1000_p_scaffold_1763_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13361..14017
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI0003693191 rbh
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22971.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
(2Fe-2S)-binding domain protein; K13483 xanthine dehydrogenase YagT iron-sulfur-binding subunit rbh
SCNpilot_cont_1000_p_scaffold_1763_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14014..14964
DNA (951bp) protein (317aa)
oxidoreductase, molybdopterin-binding subunit; K11178 xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4] rbh
Oxidoreductase, molybdopterin-binding subunit n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JN05_AGRRK rbh
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22972.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_1000_p_scaffold_1763_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14968..17163
DNA (2196bp) protein (732aa)
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase protein; K11177 xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] rbh
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Acidovorax sp. CF316 RepID=J0UDD6_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22973.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_1000_p_scaffold_1763_19
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17220..18071
DNA (852bp) protein (284aa)
aldo/keto reductase; K06221 2,5-diketo-D-gluconate reductase A [EC:1.1.1.274] rbh
Aldo/keto reductase, diketogulonate reductase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WVM5_9BURK rbh
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:EHR69536.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
SCNpilot_cont_1000_p_scaffold_1763_20
unknown

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18099..18266
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1763_21
Pseudomonas batumici, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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18276..19088
DNA (813bp) protein (271aa)
Short chain dehydrogenase(EC:1.-) {ECO:0000313|EMBL:KIH83774.1}; TaxID=226910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas batumici.;"
short chain (glucose/xylose) dehydrogenase (EC:1.1.1.-) rbh
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM18 RepID=J2N2J9_9PSED rbh
Displaying 21 items

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