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SCNpilot_cont_1000_p_scaffold_180

Search features with annotation key words

Displaying items 1-30 of 237 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_180_1
unknown

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2..79
DNA (78bp) protein (26aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_180_2

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126..437
DNA (312bp) protein (104aa)
30S ribosomal protein S10 id=3298612 bin=GWC2_Alphaproteobacteria_42_16 species=alpha proteobacterium IMCC14465 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpsJ; 30S ribosomal protein S10
SCNpilot_cont_1000_p_scaffold_180_3

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450..1322
DNA (873bp) protein (291aa)
50S ribosomal protein L3 n=1 Tax=uncultured bacterium RepID=K2EG83_9BACT rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 rbh
SCNpilot_cont_1000_p_scaffold_180_4

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1324..1944
DNA (621bp) protein (207aa)
50S ribosomal protein L4 id=3298607 bin=GWC2_Alphaproteobacteria_42_16 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
SCNpilot_cont_1000_p_scaffold_180_5

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1941..2264
DNA (324bp) protein (108aa)
50S ribosomal protein L23 id=3298606 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
SCNpilot_cont_1000_p_scaffold_180_6

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2267..3091
DNA (825bp) protein (275aa)
50S ribosomal protein L2 n=1 Tax=uncultured bacterium RepID=K2FEQ5_9BACT rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplB; 50S ribosomal subunit protein L2
SCNpilot_cont_1000_p_scaffold_180_7
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3107..3385
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GTH0_9PROT
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
rpsS; 30S ribosomal protein S19
SCNpilot_cont_1000_p_scaffold_180_8
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3388..3768
DNA (381bp) protein (127aa)
50S ribosomal protein L22 id=3298602 bin=GWC2_Alphaproteobacteria_42_16 species=Beijerinckia indica genus=Beijerinckia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_9
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3768..4454
DNA (687bp) protein (229aa)
30S ribosomal protein S3 n=1 Tax=uncultured bacterium RepID=K2EI09_9BACT rbh
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_10
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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4469..4891
DNA (423bp) protein (141aa)
50S ribosomal protein L16 id=3298596 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Puniceispirillum marinum genus=Candidatus Puniceispirillum taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_11
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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4891..5085
DNA (195bp) protein (65aa)
50S ribosomal protein L29 id=3298594 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_12

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5096..5329
DNA (234bp) protein (78aa)
30S ribosomal protein S17 n=1 Tax=uncultured bacterium RepID=K2ETU2_9BACT
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
SCNpilot_cont_1000_p_scaffold_180_13
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5428..5796
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=uncultured bacterium RepID=K2EG75_9BACT
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_14
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5796..6119
DNA (324bp) protein (108aa)
50S ribosomal protein L24 n=1 Tax=uncultured bacterium RepID=K2EI01_9BACT
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_15

Not on your lists


6129..6683
DNA (555bp) protein (185aa)
50S ribosomal protein L5 n=1 Tax=uncultured bacterium RepID=K2DTC4_9BACT rbh
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
SCNpilot_cont_1000_p_scaffold_180_16
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6684..6989
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=uncultured bacterium RepID=K2FEP3_9BACT
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_17

Not on your lists


7001..7399
DNA (399bp) protein (133aa)
30S ribosomal protein S8 id=3298578 bin=GWC2_Alphaproteobacteria_42_16 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_cont_1000_p_scaffold_180_18
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7410..7943
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=uncultured bacterium RepID=K2EG70_9BACT rbh
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_19

Not on your lists


7946..8308
DNA (363bp) protein (121aa)
50S ribosomal protein L18 n=1 Tax=uncultured bacterium RepID=K2EHZ3_9BACT
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
SCNpilot_cont_1000_p_scaffold_180_20
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8321..8872
DNA (552bp) protein (184aa)
30S ribosomal protein S5 (EC:5.2.1.8); K02988 small subunit ribosomal protein S5
30S ribosomal protein S5 id=3298395 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Puniceispirillum marinum genus=Candidatus Puniceispirillum taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_21
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8875..9072
DNA (198bp) protein (66aa)
50S ribosomal protein L30 id=3298393 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibulbus indolifex genus=Oceanibulbus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_22
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9100..9582
DNA (483bp) protein (161aa)
50S ribosomal protein L15 n=1 Tax=uncultured bacterium RepID=K2ETS8_9BACT
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_23
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9600..10943
DNA (1344bp) protein (448aa)
Protein translocase subunit SecY n=1 Tax=uncultured bacterium RepID=K2EG64_9BACT rbh
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_24
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10940..11632
DNA (693bp) protein (231aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3]
adenylate kinase id=3298387 bin=GWC2_Alphaproteobacteria_42_16 species=Citromicrobium bathyomarinum genus=Citromicrobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_25

Not on your lists


11666..12034
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=uncultured bacterium RepID=K2DTA6_9BACT
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
SCNpilot_cont_1000_p_scaffold_180_26
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12052..12444
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=1 Tax=uncultured bacterium RepID=K2FEN5_9BACT
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_180_27

Not on your lists

12489..13505
DNA (1017bp) protein (339aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=uncultured bacterium RepID=K2ETR9_9BACT rbh
SCNpilot_cont_1000_p_scaffold_180_28

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13529..13960
DNA (432bp) protein (144aa)
50S ribosomal protein L17 id=3298377 bin=GWC2_Alphaproteobacteria_42_16 species=Pelagibacterium halotolerans genus=Pelagibacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
SCNpilot_cont_1000_p_scaffold_180_29
unknown

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comp(14074..14178)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_180_30
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14180..15442)
DNA (1263bp) protein (421aa)
Membrane protein, putative id=4468714 bin=GWC2_Alphaproteobacteria_42_16 species=Wolbachia endosymbiont of Drosophila simulans genus=Wolbachia taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
Putative Na+-dicarboxylate symporter
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
Displaying items 1-30 of 237 in total

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