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SCNpilot_cont_1000_p_scaffold_762

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_762_1
unknown

Not on your lists

comp(266..928)
DNA (663bp) protein (221aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_762_2
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1074..1409)
DNA (336bp) protein (112aa)
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96); K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000255|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000255|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Short=PCD {ECO:0000255|HAMAP-Rule:MF_00434};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha car
pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B4074A
SCNpilot_cont_1000_p_scaffold_762_3

Not on your lists

comp(1402..2067)
DNA (666bp) protein (222aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpe; ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
Ribulose-phosphate 3-epimerase n=1 Tax=uncultured bacterium RepID=K2FI58_9BACT rbh
SCNpilot_cont_1000_p_scaffold_762_4
R_Gammaproteobacteria_40_19, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2210..2905)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BH14_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_40_19_curated
SCNpilot_cont_1000_p_scaffold_762_5
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3353..4195)
DNA (843bp) protein (281aa)
hypothetical protein COdytL_01720 id=4937254 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_762_6

Not on your lists

4578..5345
DNA (768bp) protein (256aa)
Bifunctional biotin synthesis protein BioCD {ECO:0000313|EMBL:EKE10326.1}; EC=6.3.3.3 {ECO:0000313|EMBL:EKE10326.1};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Biotin synthesis protein bioC / Dethiobiotin synthetase (EC:6.3.3.3)
Biotin synthesis protein BioC id=4937256 bin=GWC2_Alphaproteobacteria_42_16 species=Magnetospirillum gryphiswaldense genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
SCNpilot_cont_1000_p_scaffold_762_7
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5412..6089
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FHP1_9BACT
cycM; cytochrome C; K08738 cytochrome c
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_762_8
unknown

Not on your lists

6319..7926
DNA (1608bp) protein (536aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_762_9
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8110..9930
DNA (1821bp) protein (607aa)
ABC-type oligopeptide transport system, periplasmic component id=4937258 bin=GWC2_Alphaproteobacteria_42_16 species=Beggiatoa alba genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
family 5 extracellular solute-binding protein; K13893 microcin C transport system substrate-binding protein rbh
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_762_10
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9973..11784
DNA (1812bp) protein (604aa)
ABC-type oligopeptide transport system, periplasmic component id=4937258 bin=GWC2_Alphaproteobacteria_42_16 species=Beggiatoa alba genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
family 5 extracellular solute-binding protein; K13893 microcin C transport system substrate-binding protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_762_11
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12025..13131
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EJE3_9BACT rbh
oligopeptide ABC transporter, permease component rbh
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_762_12

Not on your lists

13131..14156
DNA (1026bp) protein (342aa)
Oligopeptide ABC transporter, permease component id=4937260 bin=GWC2_Alphaproteobacteria_42_16 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE10322.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
peptide/nickel transport system permease; K13895 microcin C transport system permease protein rbh
SCNpilot_cont_1000_p_scaffold_762_13
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14153..15760
DNA (1608bp) protein (536aa)
ABC transporter related id=4937261 bin=GWC2_Alphaproteobacteria_42_16 species=Parvibaculum lavamentivorans genus=Parvibaculum taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
peptide/nickel transport system ATP-binding protein; K13896 microcin C transport system ATP-binding protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_762_14
unknown

Not on your lists

15854..16618
DNA (765bp) protein (255aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_762_15
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16917..17204)
DNA (288bp) protein (96aa)
Uncharacterized protein id=3959818 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_762_16

Not on your lists

comp(17194..17553)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FI64_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE10520.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_762_17
unknown

Not on your lists

17764..17931
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_762_18

Not on your lists

18067..19290
DNA (1224bp) protein (408aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2DXX0_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE01877.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ATPase; K07133 rbh
SCNpilot_cont_1000_p_scaffold_762_19
Desulfococcus multivorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19464..20651
DNA (1188bp) protein (396aa)
Sel1 domain protein repeat-containing protein n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7U3A8_DESML
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:EPR43772.1}; TaxID=1121405 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus multivorans DSM 2059.;"
Sel1 domain-containing protein; K07126
SCNpilot_cont_1000_p_scaffold_762_20
GWA2_Melainabacteria_34_9_curated, Melainabacteria, Bacteria

Not on your lists

comp(20791..21129)
DNA (339bp) protein (113aa)
transcriptional modulator of MazE/toxin MazF n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B674B3
transcriptional modulator of MazE/toxin MazF
Tax=GWA2_Melainabacteria_34_9_curated
SCNpilot_cont_1000_p_scaffold_762_21
R_Gammaproteobacteria_38_14, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21116..21340)
DNA (225bp) protein (75aa)
Transcriptional regulator, AbrB family n=2 Tax=Cyanothece RepID=B7K1R8_CYAP8
transcriptional regulator, AbrB family
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_38_14_curated
SCNpilot_cont_1000_p_scaffold_762_22
unknown

Not on your lists

comp(21322..21441)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_762_23
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21648..22523
DNA (876bp) protein (292aa)
truB; tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B n=1 Tax=uncultured bacterium RepID=K2FFU8_9BACT rbh
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_762_24

Not on your lists


22539..22808
DNA (270bp) protein (90aa)
30S ribosomal protein S15 id=4220257 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
SCNpilot_cont_1000_p_scaffold_762_25

Not on your lists

22833..24965
DNA (2133bp) protein (711aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Polyribonucleotide nucleotidyltransferase id=4220255 bin=GWC2_Alphaproteobacteria_42_16 species=Phaeospirillum molischianum genus=Phaeospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
pnp; polynucleotide phosphorylase
SCNpilot_cont_1000_p_scaffold_762_26

Not on your lists

24999..26396
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EHA9_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE09558.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
2-nitropropane dioxygenase rbh
SCNpilot_cont_1000_p_scaffold_762_27
unknown

Not on your lists

comp(26617..27588)
DNA (972bp) protein (324aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_762_28
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27779..28801
DNA (1023bp) protein (341aa)
Protein TonB, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITI0_RHOCS
tonB; protein TonB
Protein TonB, putative {ECO:0000313|EMBL:ACI99198.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_cont_1000_p_scaffold_762_29
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28911..29495
DNA (585bp) protein (195aa)
Putative uncharacterized protein id=4537103 bin=GWC2_Alphaproteobacteria_42_16 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_762_30
Legionella longbeachae, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29485..30354)
DNA (870bp) protein (290aa)
LD-carboxypeptidase; K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
LD-carboxypeptidase n=1 Tax=Fluoribacter dumoffii RepID=UPI00026C7998
Putative LD-carboxypeptidase {ECO:0000313|EMBL:CBJ10790.1}; TaxID=661367 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella longbeachae serogroup 1 (strain NSW150).;"
Displaying items 1-30 of 41 in total

View Taxonomy