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SCNpilot_cont_1000_p_scaffold_950

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_950_1
unknown

Not on your lists

comp(2..301)
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_950_2

Not on your lists

comp(387..2282)
DNA (1896bp) protein (632aa)
conjugative transfer protein TraN id=4756828 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Conjugative transfer protein TraN {ECO:0000313|EMBL:EKE08836.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
conjugative transfer protein TraN; K12058 conjugal transfer mating pair stabilization protein TraN
SCNpilot_cont_1000_p_scaffold_950_3

Not on your lists

comp(2337..2906)
DNA (570bp) protein (190aa)
Sex pilus assembly and mating pair formation protein id=4756827 bin=GWC2_Alphaproteobacteria_42_16 species=Cupriavidus metallidurans genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Type-F conjugative transfer system pilin assembly protein TrbC {ECO:0000313|EMBL:EKE08835.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_1000_p_scaffold_950_4
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2891..4129)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2ET09_9BACT
traU; conjugal DNA transfer protein TraU; K12060 conjugal transfer pilus assembly protein TraU rbh
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_950_5

Not on your lists

comp(4126..4881)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EFJ4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE08833.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_950_6
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4854..5402)
DNA (549bp) protein (183aa)
Type IV secretory pathway protease TraF-like protein id=4756797 bin=GWC2_Alphaproteobacteria_42_16 species=endosymbiont of Riftia pachyptila genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
conjugative transfer signal peptidase TraF; K12062 conjugal transfer pilin signal peptidase TrbI
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_950_7
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5395..7863)
DNA (2469bp) protein (823aa)
putative inner-membrane protein traC id=4756796 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
traC; inner-membrane protein traC; K12063 conjugal transfer ATP-binding protein TraC
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_950_8
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7863..8258)
DNA (396bp) protein (132aa)
id=4756795 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_950_9
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8262..9518)
DNA (1257bp) protein (419aa)
putative conjugative transfer protein TraB id=4756794 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
TraB pilus assembly family protein; K12065 conjugal transfer pilus assembly protein TraB
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_950_10
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9496..10215)
DNA (720bp) protein (240aa)
id=4756793 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_950_11
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10202..10765)
DNA (564bp) protein (188aa)
Type IV conjugative transfer system protein TraE id=4756792 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
type IV conjugative transfer system protein TraE; K12067 conjugal transfer pilus assembly protein TraE
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_950_12
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10762..11052)
DNA (291bp) protein (97aa)
Putative uncharacterized protein id=4756791 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_950_13
unknown

Not on your lists

comp(11066..11380)
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_950_14
Candidatus Midichloria mitochondrii, Candidatus Midichloria, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11397..11930)
DNA (534bp) protein (178aa)
Single-stranded DNA-binding protein n=1 Tax=Midichloria mitochondrii (strain IricVA) RepID=F7XVZ1_MIDMI
single-strand DNA-binding protein; K03111 single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=696127 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Midichloriaceae; Candidatus Midichloria.;" source="Midichloria mitochondrii (strain IricVA).;"
SCNpilot_cont_1000_p_scaffold_950_15
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11923..13413)
DNA (1491bp) protein (497aa)
Putative uncharacterized protein id=4756789 bin=GWC2_Alphaproteobacteria_42_16 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_950_16

Not on your lists

comp(13410..14021)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FFQ4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE09525.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_1000_p_scaffold_950_17

Not on your lists

comp(14246..14473)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DXA1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE10506.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_950_18

Not on your lists

14606..15079
DNA (474bp) protein (158aa)
Helix-turn-helix protein n=1 Tax=uncultured bacterium RepID=K2ELS5_9BACT
Helix-turn-helix protein {ECO:0000313|EMBL:EKE10507.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_950_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15682..16437
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Legionella pneumophila (strain Paris) RepID=Q5X909_LEGPA
Transposase {ECO:0000313|EMBL:AIL13271.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_950_20
unknown

Not on your lists

comp(16452..18410)
DNA (1959bp) protein (653aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_950_21
unknown

Not on your lists

19051..19299
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_950_22

Not on your lists

comp(19766..22135)
DNA (2370bp) protein (790aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2DVH3_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE09706.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_950_23

Not on your lists

comp(22155..23723)
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DWN4_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE10196.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_1000_p_scaffold_950_24
unknown

Not on your lists

24184..24582
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_950_25
unknown

Not on your lists

comp(24744..25100)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_950_26

Not on your lists

25304..25852
DNA (549bp) protein (183aa)
Transcriptional repressor of Fe-S cluster biogenesis genes id=4908586 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Uncharacterized protein {ECO:0000313|EMBL:EKE09919.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transcriptional regulator; K13643 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
SCNpilot_cont_1000_p_scaffold_950_27

Not on your lists

25849..26940
DNA (1092bp) protein (364aa)
cysteine desulfurase; K04487 cysteine desulfurase [EC:2.8.1.7]
Cysteine desulfurase id=4908584 bin=GWC2_Alphaproteobacteria_42_16 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
Cysteine sulfinate desulfinase/cysteine desulfurase {ECO:0000313|EMBL:EKE09920.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_1000_p_scaffold_950_28

Not on your lists

26940..28154
DNA (1215bp) protein (405aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cysteine sulfinate desulfinase/cysteine desulfurase; K04487 cysteine desulfurase [EC:2.8.1.7] rbh
Cysteine desulfurase n=1 Tax=uncultured bacterium RepID=K2DVY0_9BACT rbh
SCNpilot_cont_1000_p_scaffold_950_29
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28169..28555
DNA (387bp) protein (129aa)
FeS cluster assembly scaffold IscU id=4908580 bin=GWC2_Alphaproteobacteria_42_16 species=Massilia timonae genus=Massilia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
iscU; scaffold protein; K04488 nitrogen fixation protein NifU and related proteins
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_950_30
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28555..28890
DNA (336bp) protein (112aa)
Uncharacterized protein id=4908578 bin=GWC2_Alphaproteobacteria_42_16 species=Phaeospirillum molischianum genus=Phaeospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein; K13628 iron-sulfur cluster assembly protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
Displaying items 1-30 of 36 in total

View Taxonomy