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SCNpilot_cont_1000_p_scaffold_1079

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1079_1
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..407
DNA (405bp) protein (135aa)
Uncharacterized protein {ECO:0000313|EMBL:AIK95649.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
SCNpilot_cont_1000_p_scaffold_1079_2
unknown

Not on your lists

comp(434..967)
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1079_3
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1024..2787)
DNA (1764bp) protein (588aa)
conjugal transfer protein TraD n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225A9DE rbh
Type IV secretion-system TraD DNA-binding domain-containing protein rbh
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1079_4
unknown

Not on your lists

2813..3394
DNA (582bp) protein (194aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1079_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3407..6127)
DNA (2721bp) protein (907aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225AF7D rbh
Uncharacterized protein {ECO:0000313|EMBL:AIL12610.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
protein TraG; K12056 conjugal transfer mating pair stabilization protein TraG rbh
SCNpilot_cont_1000_p_scaffold_1079_6
unknown

Not on your lists

comp(6224..6319)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1079_7
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6303..7703)
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACEB rbh
Uncharacterized protein {ECO:0000313|EMBL:AIK95670.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
traH; F pilus assembly protein traH; K12072 conjugative transfer pilus assembly protein TraH
SCNpilot_cont_1000_p_scaffold_1079_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7700..8515)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EGW1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL12612.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
traF; conjugal transfer disulfide-bond formation protein TraF; K12057 conjugal transfer pilus assembly protein TraF
SCNpilot_cont_1000_p_scaffold_1079_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8515..10170)
DNA (1656bp) protein (552aa)
putative conjugative transfer protein TraN n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACE9 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIL13433.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
traN; conjugative transfer protein TraN; K12058 conjugal transfer mating pair stabilization protein TraN
SCNpilot_cont_1000_p_scaffold_1079_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10167..10832)
DNA (666bp) protein (222aa)
conjugative transfer protein TrbC n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACE8
Uncharacterized protein {ECO:0000313|EMBL:AIL12616.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
trbC; conjugative transfer protein TrbC; K12059 conjugal transfer pilus assembly protein TrbC
SCNpilot_cont_1000_p_scaffold_1079_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10817..11797)
DNA (981bp) protein (327aa)
conjugal transfer protein TraU n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACE7 rbh
Conjugal transfer protein {ECO:0000313|EMBL:AIL12617.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
traU; conjugal DNA transfer protein TraU; K12060 conjugal transfer pilus assembly protein TraU
SCNpilot_cont_1000_p_scaffold_1079_12
CG_Gallio_01, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11794..12447)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F366_9PROT
type-F conjugative transfer system protein TraW; K12061 conjugal transfer pilus assembly protein TraW
Tax=CG_Gallio_01
SCNpilot_cont_1000_p_scaffold_1079_13
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12444..13055)
DNA (612bp) protein (204aa)
Type IV secretory pathway protease TraF-like protein id=4756797 bin=GWC2_Alphaproteobacteria_42_16 species=endosymbiont of Riftia pachyptila genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
traF; F pilus assembly protein traF; K12062 conjugal transfer pilin signal peptidase TrbI
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1079_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13052..15571)
DNA (2520bp) protein (840aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DSF5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL12621.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
traC; inner-membrane protein traC; K12063 conjugal transfer ATP-binding protein TraC rbh
SCNpilot_cont_1000_p_scaffold_1079_15
unknown

Not on your lists

comp(15578..16015)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B968
SCNpilot_cont_1000_p_scaffold_1079_16

Not on your lists

comp(16015..17358)
DNA (1344bp) protein (448aa)
putative conjugative transfer protein TraB n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACDF
TraB pilus assembly {ECO:0000313|EMBL:EKE08829.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
traB; F pilus assembly protein traB; K12065 conjugal transfer pilus assembly protein TraB
SCNpilot_cont_1000_p_scaffold_1079_17
unknown

Not on your lists

comp(17355..18176)
DNA (822bp) protein (274aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1079_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18179..18742)
DNA (564bp) protein (188aa)
putative F pilus assembly protein traE n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACDD
Uncharacterized protein {ECO:0000313|EMBL:AIL13425.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
traE; F pilus assembly protein traE; K12067 conjugal transfer pilus assembly protein TraE
SCNpilot_cont_1000_p_scaffold_1079_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18739..19035)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ACDC
Uncharacterized protein {ECO:0000313|EMBL:AIL12625.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_cont_1000_p_scaffold_1079_20
unknown

Not on your lists

comp(19035..19532)
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1079_21
Hyphomonas sp. L-53-1-40, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19556..19993)
DNA (438bp) protein (146aa)
Single-stranded DNA-binding protein n=1 Tax=Wolbachia sp. subsp. Drosophila simulans (strain wRi) RepID=C0R397_WOLWR
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1207058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. L-53-1-40.;"
ssb; single-strand binding protein; K03111 single-strand DNA-binding protein
SCNpilot_cont_1000_p_scaffold_1079_22

Not on your lists

comp(20074..21615)
DNA (1542bp) protein (514aa)
Putative uncharacterized protein id=4756789 bin=GWC2_Alphaproteobacteria_42_16 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Uncharacterized protein {ECO:0000313|EMBL:EKE08824.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1079_23
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21609..22283)
DNA (675bp) protein (225aa)
id=4756788 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1079_24
unknown

Not on your lists

comp(22502..23080)
DNA (579bp) protein (193aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1079_25

Not on your lists

comp(23273..23518)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DX72_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE10466.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1079_26
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23948..24379
DNA (432bp) protein (144aa)
Helix-turn-helix protein n=1 Tax=uncultured bacterium RepID=K2FGQ7_9BACT
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1079_27
endosymbiont of Acanthamoeba sp. UWC36, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24382..26733)
DNA (2352bp) protein (784aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2DVH3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KIE05233.1}; TaxID=86105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Holosporaceae.;" source="endosymbiont of Acanthamoeba sp. UWC36.;"
kinesin light chain
SCNpilot_cont_1000_p_scaffold_1079_28
unknown

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comp(26730..28394)
DNA (1665bp) protein (555aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1079_29
unknown

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comp(28864..29082)
DNA (219bp) protein (73aa)

This feature has no annotations

Displaying 29 items

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