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SCNpilot_cont_1000_p_scaffold_469

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_469_1
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..292
DNA (291bp) protein (97aa)
Cytochrome b/b6 domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CL25_PSEUX
cytochrome b/b6 domain-containing protein; K03891 ubiquinol-cytochrome c reductase cytochrome b subunit
Cytochrome b/b6 domain protein {ECO:0000313|EMBL:AEA24954.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_469_2
Streptomyces sviceus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

684..1709
DNA (1026bp) protein (342aa)
F420-dependent oxidoreductase n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI0003660DF8 rbh
Luciferase {ECO:0000313|EMBL:EDY54709.1}; TaxID=463191 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sviceus ATCC 29083.;"
putative oxidoreductase rbh
SCNpilot_cont_1000_p_scaffold_469_3
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1711..2568)
DNA (858bp) protein (286aa)
galE; NAD-dependent epimerase/dehydratase (EC:5.1.3.2) rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CCH87682.1}; EC=5.1.3.2 {ECO:0000313|EMBL:CCH87682.1};; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
UDP-glucose 4-epimerase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B3B8C0 rbh
SCNpilot_cont_1000_p_scaffold_469_4
unknown

Not on your lists

2615..2713
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_469_5
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2769..3047
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CL23_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA24952.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_469_6
unknown

Not on your lists

comp(2942..3217)
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_469_7
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3292..3531
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Actinoplanes sp. N902-109 RepID=R4LEH8_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL15461.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
SCNpilot_cont_1000_p_scaffold_469_8
Streptomyces sp. e14, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3533..5302)
DNA (1770bp) protein (590aa)
acyl-CoA dehydrogenase; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1] rbh
acyl-CoA dehydrogenase n=1 Tax=Streptomyces sp. Amel2xE9 RepID=UPI0003740F7A rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EFF89223.2}; TaxID=645465 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. e14.;"
SCNpilot_cont_1000_p_scaffold_469_9
Mycobacterium rufum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5312..6277)
DNA (966bp) protein (322aa)
Brp-like protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SDM9_GEOOG
Uncharacterized protein {ECO:0000313|EMBL:KGI70243.1}; TaxID=318424 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium rufum.;"
brp-like protein
SCNpilot_cont_1000_p_scaffold_469_10
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6488..7336
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Arthrobacter sp. TB 23 RepID=UPI0002F52970 rbh
Xanthorhodopsin {ECO:0000313|EMBL:AJW80239.1}; TaxID=33014 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. insidiosus.;"
bacterioopsin
SCNpilot_cont_1000_p_scaffold_469_11
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7410..9038)
DNA (1629bp) protein (543aa)
phosphoglucomutase, alpha-D-glucose phosphate-specific; K01835 phosphoglucomutase [EC:5.4.2.2] rbh
Phosphoglucomutase, alpha-D-glucose phosphate-specific {ECO:0000313|EMBL:AEA25818.1}; EC=5.4.2.2 {ECO:0000313|EMBL:AEA25818.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Phosphoglucomutase, alpha-D-glucose phosphate-specific n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D0W6_PSEUX rbh
SCNpilot_cont_1000_p_scaffold_469_12
unknown

Not on your lists

9253..9423
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_469_13
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9484..10497)
DNA (1014bp) protein (338aa)
Transcriptional regulator n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NA23_MICTS rbh
transcriptional regulator rbh
Transcriptional regulator {ECO:0000313|EMBL:BAJ75853.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_1000_p_scaffold_469_14
Saccharomonospora cyanea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10494..11087)
DNA (594bp) protein (198aa)
haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED n=1 Tax=Streptomyces acidiscabies RepID=UPI000287A403
Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED {ECO:0000313|EMBL:EHR63809.1}; TaxID=882082 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora cyanea NA-134.;"
haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED; K07025 putative hydrolase of the HAD superfamily
SCNpilot_cont_1000_p_scaffold_469_15
Amycolatopsis lurida, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11192..11998
DNA (807bp) protein (269aa)
Serine/threonine protein phosphatase n=1 Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2YAX4_9PSEU
Serine/threonine protein phosphatase {ECO:0000313|EMBL:AJK55880.1}; TaxID=1460371 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis lurida NRRL 2430.;"
serine/threonine protein phosphatase
SCNpilot_cont_1000_p_scaffold_469_16
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11999..12391)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CPS1_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26104.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_469_17
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12582..15824
DNA (3243bp) protein (1081aa)
RecBCD enzyme subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01486};; Exonuclease V subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; Helicase/nuclease RecBCD subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
exodeoxyribonuclease V subunit gamma; K03583 exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] rbh
Exodeoxyribonuclease V, gamma subunit n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CRH2_PSEUX rbh
SCNpilot_cont_1000_p_scaffold_469_18
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15821..19135
DNA (3315bp) protein (1105aa)
RecBCD enzyme subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01485};; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; Exonuclease V subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; Helicase/nuclease RecBCD subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
exodeoxyribonuclease V subunit beta; K03582 exodeoxyribonuclease V beta subunit [EC:3.1.11.5] rbh
Exodeoxyribonuclease V, beta subunit n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CRH3_PSEUX rbh
SCNpilot_cont_1000_p_scaffold_469_19
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19132..20961
DNA (1830bp) protein (610aa)
recD; exodeoxyribonuclease V subunit alpha (EC:3.1.11.5); K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] rbh
RecBCD enzyme subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01487};; Exonuclease V subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; Helicase/nuclease RecBCD subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
Exodeoxyribonuclease V alpha chain n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XLC2_MICPN rbh
SCNpilot_cont_1000_p_scaffold_469_20
unknown

Not on your lists

comp(20980..21204)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D0X0_PSEUX
hypothetical protein
SCNpilot_cont_1000_p_scaffold_469_21
Mycobacterium vanbaalenii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21325..22236)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Kocuria sp. UCD-OTCP RepID=UPI0003828133
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM16778.1}; TaxID=350058 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1).;"
SCNpilot_cont_1000_p_scaffold_469_22
unknown

Not on your lists

22421..22900
DNA (480bp) protein (160aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_469_23
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22938..23906)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CPS4_PSEUX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEA26107.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_469_24
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23914..27240)
DNA (3327bp) protein (1109aa)
Exonuclease SbcC n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CPS6_PSEUX rbh
Exonuclease SbcC {ECO:0000313|EMBL:AEA26109.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
exonuclease SbcC; K03546 exonuclease SbcC rbh
SCNpilot_cont_1000_p_scaffold_469_25
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27240..28409)
DNA (1170bp) protein (390aa)
Nuclease SbcCD, D subunit n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CPS7_PSEUX rbh
nuclease SbcCD subunit D; K03547 exonuclease SbcD rbh
Nuclease SbcCD, D subunit {ECO:0000313|EMBL:AEA26110.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_469_26
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28440..28877)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI000363E32B
Uncharacterized protein {ECO:0000313|EMBL:ETK37709.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_469_27
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28973..30739)
DNA (1767bp) protein (589aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CPT4_PSEUX rbh
hypothetical protein; K06915 rbh
Uncharacterized protein {ECO:0000313|EMBL:AEA26117.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_469_28
unknown

Not on your lists

30751..31890
DNA (1140bp) protein (380aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_469_29
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31971..32738
DNA (768bp) protein (256aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CPS5_PSEUX rbh
glyoxalase/bleomycin resistance protein/dioxygenase; K06996 rbh
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:AEA26108.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_1000_p_scaffold_469_30
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32866..33312)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Leucobacter salsicius RepID=UPI00034B065B
Uncharacterized protein {ECO:0000313|EMBL:EYT56529.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
hypothetical protein; K09705 hypothetical protein
Displaying items 1-30 of 71 in total

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